PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 320aa MW: 36528.3 Da PI: 8.0762

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.13G317200.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.4e-05	155	174	1	20
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 + C++C+ksF+r n++ H+ Glyma.13G317200.1.p 155 FACSICSKSFNRYNNMQMHM 174 78*****************9 PP
2	zf-C2H2	14.3	0.00012	239	261	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C +C+ksF k + ++H +++ Glyma.13G317200.1.p 239 FMCRKCSKSFAVKGDWRTHEKNC 261 89*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.38E-5	141	178	No hit	No description
Pfam	PF13912	1.7E-4	155	174	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	10.533	155	182	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.19	155	177	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	6.7E-6	155	174	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	157	177	IPR007087	Zinc finger, C2H2
SMART	SM00355	190	202	234	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	3.7E-5	225	259	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	6.99E-6	225	259	No hit	No description
SMART	SM00355	56	239	259	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MSFRECNNVE NKNLCLQTPT FIEWLKPSSS SSQTSSISSS PPSYSLIQHE QLVQDQTIQF 60 LPFKEDQHIG VQKEGLEVKE EKKVEQVTVA LHIGLPNTRG HEPDDDHDAD EKKLFHVKEE 120 EEPLKKSFQG NCSFNQERRF WIPTPAQILV GPMQFACSIC SKSFNRYNNM QMHMWGHGSE 180 FRKGPESLKG TQPAAMLRLP CYCCAQGCKN NINHPRAKPL KDFRTLQTHY KRKHGAKPFM 240 CRKCSKSFAV KGDWRTHEKN CGKLWYCTCG SDFKHKRSLK DHIRSFGKGH SPHPSLEGFV 300 EDEKECVTGS DDEDDVAHA*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional regulator. {ECO:0000305\|PubMed:20541552}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.13G317200.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003541972.1	0.0	zinc finger protein WIP3
Refseq	XP_028188600.1	0.0	zinc finger protein WIP3-like
Swissprot	Q9SGD1	1e-120	ZWIP3_ARATH; Zinc finger protein WIP3
TrEMBL	A0A0B2RED5	0.0	A0A0B2RED5_GLYSO; Protein TRANSPARENT TESTA 1
TrEMBL	I1M4D8	0.0	I1M4D8_SOYBN; Uncharacterized protein
STRING	GLYMA13G39370.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF170	34	289
Representative plant	OGRP410	15	97

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G08290.1	1e-114	WIP domain protein 3

Link Out ? help Back to Top
Phytozome	Glyma.13G317200.1.p
Entrez Gene	100800644

Publications ? help Back to Top
Zhou X,Meier I Efficient plant male fertility depends on vegetative nuclear movement mediated by two families of plant outer nuclear membrane proteins. Proc. Natl. Acad. Sci. U.S.A., 2014. 111(32): p. 11900-5 [PMID:25074908]