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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G307300.2.p | ||||||||
Common Name | GLYMA_13G307300, MYB172 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 74aa MW: 8189 Da PI: 4.7665 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.2 | 1.2e-10 | 24 | 65 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 ++++E+ l+++ k+ G + W+ Ia +++ gRt++++ +w Glyma.13G307300.2.p 24 VEFSEDEETLIIRMYKLVGER-WSIIAGRIP-GRTAEEIEKYWT 65 679******************.*********.***********5 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 11.749 | 18 | 72 | IPR017930 | Myb domain |
SMART | SM00717 | 1.3E-8 | 22 | 70 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.17E-9 | 23 | 68 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-9 | 24 | 65 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.75E-8 | 25 | 64 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 1.5E-13 | 25 | 66 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 74 aa Download sequence Send to blast |
MADSDLSSSQ ISTHSTGNRG SSKVEFSEDE ETLIIRMYKL VGERWSIIAG RIPGRTAEEI 60 EKYWTSRFSG SSE* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in developing trichomes and non-root hair cells. {ECO:0000269|PubMed:15063185, ECO:0000269|PubMed:15584952}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | MYB-type transcription factor involved in epidermal cell fate specification. Acts as a negative regulator of trichome development, by mediating lateral inhibition. Promotes the formation of hair developing cells in H position in root epidermis, probably by inhibiting non-hair cell formation. {ECO:0000269|PubMed:15063185, ECO:0000269|PubMed:15584952}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G307300.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KP238114 | 4e-54 | KP238114.1 Lablab purpureus caprice and triptychon-like enhancer transcript variant X1 (etcl1) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001237796.1 | 9e-46 | MYB transcription factor MYB172 | ||||
Swissprot | Q9LNI5 | 5e-17 | ETC1_ARATH; MYB-like transcription factor ETC1 | ||||
TrEMBL | Q0PJF6 | 2e-44 | Q0PJF6_SOYBN; MYB transcription factor MYB172 | ||||
STRING | GLYMA12G32130.3 | 6e-40 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01380.1 | 2e-19 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G307300.2.p |
Entrez Gene | 778180 |