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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.13G303200.1.p |
| Common Name | GLYMA_13G303200, LOC100815765 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
| Family |
MYB |
| Protein Properties |
Length: 228aa MW: 26475.9 Da PI: 6.7063 |
| Description |
MYB family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.13G303200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 56.1 | 8.2e-18 | 14 | 61 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g+WT+eEd +l+d+v+++G +W++ ++ g+ R++k+c++rw++yl
Glyma.13G303200.1.p 14 KGPWTPEEDRKLIDYVTKYGHWNWRLLPKFAGLARCGKSCRLRWLNYL 61
79******************99************************97 PP
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| 2 | Myb_DNA-binding | 58.9 | 1.2e-18 | 67 | 110 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46
rg+++ eE+e +v+++++lG++ W++Ia++++ gRt++++k++w++
Glyma.13G303200.1.p 67 RGNFSHEEEETIVRLHEKLGNR-WSAIAAELP-GRTDNEIKNHWHT 110
89********************.*********.***********97 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 228 aa
Download sequence Send
to blast |
MVRTPCCDKN GLKKGPWTPE EDRKLIDYVT KYGHWNWRLL PKFAGLARCG KSCRLRWLNY 60
LRPDVKRGNF SHEEEETIVR LHEKLGNRWS AIAAELPGRT DNEIKNHWHT ALKKRFERKP 120
KAKRRTEKEG NVVSKSMERV VLENCSEYAV ITTDAAAAIT NHENSVLEGD DYGLSFLDTY 180
TEPDVCANFW TEPYLIDNSY VPPEGDVVEL WSHNDLYMHE YCEGFFC*
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| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 113 | 120 | KRFERKPK |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Fades out in old roots and leaves. {ECO:0000269|PubMed:24415840}. |
| Uniprot | TISSUE SPECIFICITY: Expressed in imbibed seeds, hypocotyls, cotyledons, roots, seedlings, siliques and flowers. {ECO:0000269|PubMed:24415840}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}. |
