PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G298600.1.p
Common NameGLYMA_13G298600, LOC100809887
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 420aa    MW: 47139.5 Da    PI: 6.305
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G298600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.41.7e-18218268256
                  AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                           y+GVr+++ +g+WvAeIr p++   r+r +lg+f+tae+Aa a+++ + k +ge
  Glyma.13G298600.1.p 218 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDTAEDAAMAYDREAFKQRGE 268
                          59******9.**********955...5************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000189.02E-32217277No hitNo description
PROSITE profilePS5103222.392218275IPR001471AP2/ERF domain
SMARTSM003806.9E-38218281IPR001471AP2/ERF domain
SuperFamilySSF541712.35E-22218276IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.5E-31218276IPR001471AP2/ERF domain
PfamPF008471.3E-11219268IPR001471AP2/ERF domain
PRINTSPR003677.1E-11219230IPR001471AP2/ERF domain
PRINTSPR003677.1E-11241257IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MAAANSGKFD VGDETHKNSR KGSESQDWEI EKGKGVDCSS SQRRQWKPVF DDASISYNRP  60
LKKIRSPDRQ ETNQSSSSSS STTPFEPSPL SNPPPSSSRI VFPFAFDGSQ HPMQFPHQFG  120
TTTNSPFPHP SFQNQQHQMI SFGSSQQHNN LAYPPIIARD SSSLVHHHHQ QQQQHQQQLL  180
QYWSGALNLS PRGMLTRLGP DGRPLFSPPT QRINTTKLYR GVRQRHWGKW VAEIRLPRNR  240
TRLWLGTFDT AEDAAMAYDR EAFKQRGENA RLNFPELFFN KDKKEQGEEE ASSPVLSAIA  300
KQNEPPPAHH RDVTIEESNE NDSGDATVSD EVHAPAATAS SEGVSQELVW GEMSAWFNAI  360
PAAWGPGSPM WDDLDATNNL LCQSHIPFSN PNQQQFNDAD DAQRQEQNTG PGYLWKDQD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A5e-20217275160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.621030.0leaf
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in abiotic stress tolerance. Can directly regulate stress-related gene expression by binding to the DNA sequence 5'-[AG]CCGAC-3' (DRE element) of their promoter region. Involved in the regulation of stomatal closure movement under drought stress (PubMed:23625358). Acts as a positive regulator of drought stress response (PubMed:22095047). {ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G298600.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by drought stress (PubMed:18550687, PubMed:22095047, PubMed:23625358). Induced by salt stress (PubMed:22095047). Induced by abscisic acid (ABA) and heat stress (PubMed:23625358). {ECO:0000269|PubMed:18550687, ECO:0000269|PubMed:22095047, ECO:0000269|PubMed:23625358}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFR8227370.0FR822737.1 Glycine max cv. Xanhtiendai partial mRNA for drought responsive element binding protein 5 (DREB5 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541916.10.0ethylene-responsive transcription factor ERF053
SwissprotQ9SKT16e-55ERF53_ARATH; Ethylene-responsive transcription factor ERF053
TrEMBLK7M2Q00.0K7M2Q0_SOYBN; Uncharacterized protein
STRINGGLYMA13G37451.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42683258
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.11e-56ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Cheng MC,Hsieh EJ,Chen JH,Chen HY,Lin TP
    CORRECTION. Arabidopsis RGLG2, Functioning as a RING E3 Ligase, Interacts with AtERF53 and Negatively Regulates the Plant Drought Stress Response.
    Plant Physiol., 2016. 170(2): p. 1162-3
    [PMID:26826724]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]