PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G294000.1.p
Common NameGLYMA_13G294000, LOC100820039
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 280aa    MW: 31849 Da    PI: 8.801
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G294000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM103.92.1e-32481881128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk... 79 
                          lp+G++F+Ptd+e++ e+L++kv+++ ++l+        +++   +i+ ++P++Lp  v+++    +fF++ +k+y+tg+rk+r+++   
  Glyma.13G294000.1.p  48 LPAGVKFDPTDQEIL-EHLEAKVRSDIHKLHPlidefipTLEGEnGICCTHPEKLP-GVSKDGLIRHFFHRPSKAYTTGTRKRRKVHtda 135
                          799***********9.99*****99984443333332222333336**********.555555677******************744446 PP

                  NAM  80 ...sgyWkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128
                             + +W++tgk+++v+  +g+l+g kk+Lv+y++  +++k+ekt+Wvmh+y+l
  Glyma.13G294000.1.p 136 dgsETRWHKTGKTRPVFI-SGKLKGYKKILVLYTNyrKQRKPEKTNWVMHQYHL 188
                          555788************.999***********5444788889*********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.27E-3743207IPR003441NAC domain
PROSITE profilePS5100532.63248207IPR003441NAC domain
PfamPF023651.4E-1549188IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MTQCNYPQNS HSIIVERHKD SLIRTCPTCG LHVKCQEQAA GIHDLPGLPA GVKFDPTDQE  60
ILEHLEAKVR SDIHKLHPLI DEFIPTLEGE NGICCTHPEK LPGVSKDGLI RHFFHRPSKA  120
YTTGTRKRRK VHTDADGSET RWHKTGKTRP VFISGKLKGY KKILVLYTNY RKQRKPEKTN  180
WVMHQYHLGN NEEEKEGELV VSKVFYQTQP RQCGSLMKDL YPAKLSGEGV HEVTNHKNTG  240
YVEYYNNSFV SYDQGDQHRS STAQLVSHFP VHDGAPFIP*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G294000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150400.0AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006594832.10.0NAC domain-containing protein 73
RefseqXP_028188143.10.0NAC domain-containing protein 73-like
SwissprotO494591e-115NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A445IBR60.0A0A445IBR6_GLYSO; NAC domain-containing protein 73
TrEMBLI1M3P60.0I1M3P6_SOYBN; Uncharacterized protein
STRINGGLYMA13G36980.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Representative plantOGRP5251585
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-104NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]