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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.13G293800.1.p |
| Common Name | GLYMA_13G293800 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
C2H2 |
| Protein Properties |
Length: 475aa MW: 52317.5 Da PI: 9.0902 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.13G293800.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 14.7 | 9e-05 | 61 | 83 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
++C++C k F r nL+ H r H
Glyma.13G293800.1.p 61 FVCEICLKGFQRDQNLQLHRRGH 83
89*******************88 PP
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| 2 | zf-C2H2 | 13.5 | 0.00022 | 137 | 159 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
+kC++C+k++ +s+ k H +t+
Glyma.13G293800.1.p 137 WKCEKCSKRYAVQSDWKAHSKTC 159
58*****************9998 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0010150 | Biological Process | leaf senescence |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
| GO:0048573 | Biological Process | photoperiodism, flowering |
| GO:0003676 | Molecular Function | nucleic acid binding |
| GO:0046872 | Molecular Function | metal ion binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 475 aa
Download sequence Send
to blast |
MLEKMDDGEI SNAFPHQNPS TAASNNQPPT LKRKRNLPGN PDPEAEVIVL SPKTLMATNR 60
FVCEICLKGF QRDQNLQLHR RGHNLPWKLK QRTSKEVRKR VYVCPEKTCV HHHPSRALGD 120
LTGIKKHFCR KHGEKKWKCE KCSKRYAVQS DWKAHSKTCG TREYKCDCGT IFSRRDSFIT 180
HRAFCDALAE ETARVNAASN ISNYSIMQNP LGPNMTTQFS SFFKPNSCSD QEPAPGNQTS 240
NKGLSLWMTQ TSQAHEAMAN NNNLHEFHQL GSVTSPTAIY GTSGNPLASC SNPPPSNYQL 300
NWVFGNKLSS NGSHQELTST ASLPLVNNIV KDNPNLQLIS VPSLYSSQHQ SHQASSANMS 360
ATALLQKAAQ VGTTSSDPSS LFHGSIGLKC NSPGQDGNKF CGMYGSSSVL TTSHHGSEAE 420
NNNNNYSGDL SQIPPTKRRH VQNEESAWGQ TRDFLGVGGA NHLPPFINQR MDLI*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed throughout development. {ECO:0000269|PubMed:21265895}. |
| Uniprot | TISSUE SPECIFICITY: Highly expressed in vegetative organs and at lower levels in flowers and siliques. Expressed predominantly in roots. In roots, present in cortex, endodermis, and pericycle layer (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000305|PubMed:21265895}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015040 | 0.0 | AP015040.1 Vigna angularis var. angularis DNA, chromosome 7, almost complete sequence, cultivar: Shumari. |
