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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.13G279900.1.p |
| Common Name | GLYMA_13G279900, Glyma13g35550.1, SNAC49 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
NAC |
| Protein Properties |
Length: 344aa MW: 38666.4 Da PI: 8.1129 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.13G279900.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 165.9 | 1.4e-51 | 14 | 139 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90
lppGfrF Ptdeel+v+yL++kv+g++++l +i+e+d+yk++Pw Lp+k+ +ekewyfFs+rd+ky++g+r+nr++ sgyWkatg+dk
Glyma.13G279900.1.p 14 LPPGFRFYPTDEELLVQYLCRKVAGHHFSL-PIIAEIDLYKFDPWVLPSKAIFGEKEWYFFSPRDRKYPNGSRPNRVAGSGYWKATGTDK 102
79**************************99.88***************7777799*********************************** PP
NAM 91 evlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
+++ +g++vg+kk Lvfy g+apkg+kt+W+mheyrl
Glyma.13G279900.1.p 103 IITT-EGRKVGIKKALVFYVGKAPKGTKTNWIMHEYRL 139
9999.999****************************97 PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009414 | Biological Process | response to water deprivation |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 344 aa
Download sequence Send
to blast |
MGVPEKDPLS QLSLPPGFRF YPTDEELLVQ YLCRKVAGHH FSLPIIAEID LYKFDPWVLP 60
SKAIFGEKEW YFFSPRDRKY PNGSRPNRVA GSGYWKATGT DKIITTEGRK VGIKKALVFY 120
VGKAPKGTKT NWIMHEYRLL DSSRKNTGTK LDDWVLCRIY KKNSSAQKTA QNGVVPSNEH 180
TQYSNGSSSS SSSQLEDVLE SLPSIDERCF AMPRVNTLQQ QQHHEEKVNV QNLGAGGLMD 240
WTNPSVLNSV ADFASGNNQV VQDQTQGMVN YNCNDLYVPT LCHLDSSVPL KMEEEVQSGV 300
RNQRVGNNNS WFLQNDFTQG FQNSVDTCGF KYPVQPVGFG FRN*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-109 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-109 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-109 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-109 | 1 | 168 | 4 | 171 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 1e-109 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 3swm_B | 1e-109 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 3swm_C | 1e-109 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 3swm_D | 1e-109 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_A | 1e-109 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_B | 1e-109 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_C | 1e-109 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 3swp_D | 1e-109 | 1 | 168 | 7 | 174 | NAC domain-containing protein 19 |
| 4dul_A | 1e-109 | 1 | 168 | 4 | 171 | NAC domain-containing protein 19 |
| 4dul_B | 1e-109 | 1 | 168 | 4 | 171 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Expression -- UniGene
? help Back to Top |
| UniGene ID |
E-value |
Expressed in |
| Gma.33222 | 0.0 | cotyledon| flower| hypocotyl| leaf| meristem| root| seed coat| somatic embryo |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in guard cells of the epidermis. {ECO:0000269|PubMed:25005917}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that acts downstream of MYC2 in the jasmonate-mediated response to Botrytis cinerea infection (PubMed:28733419). With MYC2 forms a transcription module that regulates wounding-responsive genes (PubMed:28733419). Involved in jasmonate- and coronatine-mediated stomatal reopening in response to Pseudomonas syringae pv tomato DC3000 infection (PubMed:25005917). Regulates the expression of threonine deaminase 2 (TD2) through promoter binding (PubMed:28733419). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Induced by jasmonate (JA) (PubMed:25005917, PubMed:28733419, PubMed:30610166). Induced by wounding (PubMed:28733419, PubMed:25005917). Induced by infection with the fungal pathogen Botrytis cinerea (PubMed:28733419). Induced by coronatine (PubMed:25005917). {ECO:0000269|PubMed:25005917, ECO:0000269|PubMed:28733419, ECO:0000269|PubMed:30610166}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | KT031218 | 0.0 | KT031218.1 Glycine max clone HN_CCL_59 NAC transcription factor (Glyma13g35550.1) mRNA, partial cds. |
