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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.13G257000.1.p |
Common Name | GLYMA_13G257000, LOC100810422 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
MIKC_MADS |
Protein Properties |
Length: 207aa MW: 23644.1 Da PI: 9.7092 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.13G257000.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 83.1 | 1.8e-26 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
k+i+n rqvtfskRr+g++KKA+ELS+LCdae+a+i+fs+t kl+ey+s
Glyma.13G257000.1.p 9 KKIDNINARQVTFSKRRKGLFKKAQELSTLCDAEIALIVFSTTSKLFEYAS 59
689**********************************************86 PP
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2 | K-box | 37.9 | 7.3e-14 | 94 | 169 | 23 | 98 |
K-box 23 kLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98
L+keie +e +l Ge+++ L++keLq++e+ L++ ++i + K+e ++++i++l+ ke +l een++L++ +
Glyma.13G257000.1.p 94 ILRKEIEHKTNEMSQLNGEEIQGLTIKELQKVEELLQRRWTTISKIKDEKIIQEINHLKTKEAKLMEENQKLKQSF 169
5899999999**************************************************************9976 PP
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Protein Features
? help Back to Top |
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
PROSITE profile | PS50066 | 28.749 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 1.3E-36 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 9.16E-30 | 1 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.10E-35 | 2 | 74 | No hit | No description |
PRINTS | PR00404 | 3.2E-25 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.1E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-25 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.2E-25 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS51297 | 10.519 | 85 | 176 | IPR002487 | Transcription factor, K-box |
Pfam | PF01486 | 3.8E-12 | 94 | 168 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 207 aa
Download sequence Send
to blast |
MARKKIPIKK IDNINARQVT FSKRRKGLFK KAQELSTLCD AEIALIVFST TSKLFEYASS 60 SMQQILERRD RHSGIQGLVN PSIGQQLGSD SLGILRKEIE HKTNEMSQLN GEEIQGLTIK 120 ELQKVEELLQ RRWTTISKIK DEKIIQEINH LKTKEAKLME ENQKLKQSFV REQRQPYESF 180 TCSSSEFPPD CGNSDTSLKL GLSLFE*
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Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Widely expressed with highest levels in shoot tips and axillary buds. Also found in fully developed pedicels and flowers. |
Functional Description ? help
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Source |
Description |
UniProt | Putative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state. |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | AP015038 | 6e-68 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |