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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.13G255200.3.p |
| Common Name | LOC100805092 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
MIKC_MADS |
| Protein Properties |
Length: 195aa MW: 22160.3 Da PI: 9.8942 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.13G255200.3.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 87.2 | 9.4e-28 | 10 | 59 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
ri+n++ rqvtfskRrng+lKKA ELS+LCdaev +++fsstgkly+y+s
Glyma.13G255200.3.p 10 RIDNSTSRQVTFSKRRNGLLKKARELSILCDAEVGLMVFSSTGKLYDYAS 59
8***********************************************86 PP
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| 2 | K-box | 65.9 | 1.4e-22 | 59 | 124 | 34 | 99 |
K-box 34 eqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99
+ R+l+Ge+L+ L +keLq+Le+qLe slk +R kK+++l+++i+el++k + +++en +L +k+e
Glyma.13G255200.3.p 59 STRQLMGEELTGLGIKELQNLENQLEMSLKGVRMKKDQILTNEIKELRQKGNIIHQENVELYQKME 124
57*************************************************************987 PP
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| Protein Features
? help Back to Top |
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| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50066 | 31.945 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 1.2E-40 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 7.33E-28 | 2 | 64 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 2.21E-37 | 2 | 60 | No hit | No description |
| PRINTS | PR00404 | 4.0E-29 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 3.1E-25 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.0E-29 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.0E-29 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS51297 | 11.829 | 39 | 129 | IPR002487 | Transcription factor, K-box |
| Pfam | PF01486 | 2.2E-20 | 58 | 123 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 195 aa
Download sequence Send
to blast |
MGRGKIAIRR IDNSTSRQVT FSKRRNGLLK KARELSILCD AEVGLMVFSS TGKLYDYAST 60
RQLMGEELTG LGIKELQNLE NQLEMSLKGV RMKKDQILTN EIKELRQKGN IIHQENVELY 120
QKMEQIQKEN AELQKKVYEA RSTNEENVAS NPSYNVRNGY DSLASISLQL SQPQSQYKYS 180
EPSTKAMKLG LQLH*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Ubiquitous. {ECO:0000269|PubMed:14701936}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. |
| Function -- GeneRIF ? help
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- Study describes molecular cloning and characterization of NMHC5 gene coding for a MADS-Box transcription factor which seems to promote root development and nodulation in Soybean. [NMHC5]
[PMID: 26404246]
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