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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G251000.1.p | ||||||||
Common Name | GLYMA_13G251000, LOC100807745 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | GeBP | ||||||||
Protein Properties | Length: 449aa MW: 49235.5 Da PI: 4.9882 | ||||||||
Description | GeBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF573 | 114.7 | 5.7e-36 | 199 | 297 | 1 | 97 |
DUF573 1 klfqrlwseeDeivlLqGlidfkaktgkspsd..didafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqki 88 k+fqrlwseeDe+++ +G+++f++ktg +p + +++af++fvkks++++vs +ql eK+rrLKkKf+++ k k+g+ p+fsk+hdqk Glyma.13G251000.1.p 199 KKFQRLWSEEDELAIVKGVVEFTSKTGLDPLKfpNTNAFHDFVKKSLHVEVSCNQLKEKVRRLKKKFETQAGKGKNGEAPKFSKPHDQKF 288 68**************************877666******************************************************** PP DUF573 89 felskkiWg 97 felskk+Wg Glyma.13G251000.1.p 289 FELSKKVWG 297 ********8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04504 | 8.7E-34 | 201 | 297 | IPR007592 | Protein of unknown function DUF573 |
Sequence ? help Back to Top |
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Protein Sequence Length: 449 aa Download sequence Send to blast |
MAQKQKLRPS PLDEPPTASS SDSEEEEPQQ QQPSSQKNKE EEDEEVSSGE EEEEDEEEEE 60 AASSEEEEED EDLPPPPVSK NPPPPPANPQ PQHSSSESET ESGSETESEP DPTPVKVKPL 120 ASKPMDQAQK PKAQPSPAPP PKLTLKRPAE NNNNNARVAD SKRAKKKATE SSSAANSAAA 180 AASDDEMEED GKKSGDNSKK FQRLWSEEDE LAIVKGVVEF TSKTGLDPLK FPNTNAFHDF 240 VKKSLHVEVS CNQLKEKVRR LKKKFETQAG KGKNGEAPKF SKPHDQKFFE LSKKVWGREV 300 TAGANGGPVE KPKSNGSAVK SPKKKESGSR NVASAKKPKP ESKPEPVPVL SLEYKDSEKM 360 QINQKPDGGD ASLFLRELAR SKEGASICKL DEDDVKRGLE LIGESKRAEL RGKWKKLHLA 420 EMELFANRSE LIGEQTKLIL EALQASDH* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.36238 | 0.0 | root| seed coat |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G251000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT097104 | 4e-37 | BT097104.1 Soybean clone JCVI-FLGm-26C13 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003541767.1 | 0.0 | STOREKEEPER protein | ||||
Refseq | XP_028188775.1 | 0.0 | STOREKEEPER protein-like | ||||
TrEMBL | A0A445I9S7 | 0.0 | A0A445I9S7_GLYSO; Putative transcription factor isoform A | ||||
TrEMBL | K7M1T5 | 0.0 | K7M1T5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G32440.2 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1831 | 34 | 90 | Representative plant | OGRP4222 | 5 | 23 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G11510.1 | 8e-27 | DNA-binding storekeeper protein-related transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G251000.1.p |
Entrez Gene | 100807745 |