PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G250300.1.p
Common NameGLYMA_13G250300, LOC100806159
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 209aa    MW: 24322.7 Da    PI: 4.5971
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G250300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.95.5e-114086455
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH  4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                         ++ e ErrRR+++ s++  Lr+++P       + ++Ka+i+e A+ YI +Lq
  Glyma.13G250300.1.p 40 KNLETERRRREKLSSRLLMLRSIVPII-----TNMNKAMIVEDAITYIEKLQ 86
                         56689*********************6.....58*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474594.45E-1635102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.53E-103590No hitNo description
Gene3DG3DSA:4.10.280.109.3E-1535105IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088813.8143685IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-83986IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-114291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 209 aa     Download sequence    Send to blast
MEYEDEDWLC VTMDEFSLAT ENGCNRKRNF DDDTKEYKSK NLETERRRRE KLSSRLLMLR  60
SIVPIITNMN KAMIVEDAIT YIEKLQDKVQ SLSQELHQME ATSEETAETK IVEIDAAEDM  120
KNWGIQEEVI VEEINENKLW VKIIVEKKRG RFSRLMEALN NFGIELIDTN LTTTKGAFLI  180
TSFIKGKNGE RLEIHQTKNL LQDIINDI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14449ERRRRE
24550RRRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G250300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150385e-50AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541764.11e-149transcription factor DYT1
RefseqXP_028189699.11e-149transcription factor DYT1-like
TrEMBLA0A445I9S01e-148A0A445I9S0_GLYSO; Transcription factor DYT1
TrEMBLK7M1S91e-148K7M1S9_SOYBN; Uncharacterized protein
STRINGGLYMA13G32370.21e-149(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF55102948
Representative plantOGRP1030948
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21330.16e-29bHLH family protein