PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G244400.1.p
Common NameGLYMA_13G244400, LOC100793951
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 476aa    MW: 53269.1 Da    PI: 10.7259
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G244400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.7e-07740236
                         SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS- CS
      Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRt 36
                         grW t+E++ll  av ++G ++Wk +a+++   Rt
  Glyma.13G244400.1.p  7 GRWGTWEELLLGGAVLRYGARNWKVVAAELR-ART 40
                         8*****************************9.888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF002491.1E-5741IPR001005SANT/Myb domain
SuperFamilySSF473701.24E-17264370IPR001487Bromodomain
Gene3DG3DSA:1.20.920.101.0E-14264375IPR001487Bromodomain
SMARTSM002973.5E-16266370IPR001487Bromodomain
CDDcd043693.96E-14271365No hitNo description
PfamPF004392.2E-11274354IPR001487Bromodomain
PROSITE profilePS5001410.125281351IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MRTEVMGRWG TWEELLLGGA VLRYGARNWK VVAAELRART VCPYIITPEV CKAKYEDLQK  60
RYSGNKAWFE ELRKTRVAEL KRALEVSEDS IGSLESKLES LKAGKNEKKD DRYVDKGSAR  120
PKLHVASQKL ERVESSTKET SKDGLSAGSF THETRTNWSP ECPVPARSVE DMETKPEVSH  180
STEQAKVLNV DNRAHTIYEG QGGSLKKRRG KRKRKDCGRN MKEASVGESD LLDSADIVSW  240
CKESSTSNCG EVAKSCGVDD QNRNLKKDRV EDMMEILDFI FETKGAPAFR RRLDSQKRGR  300
YKKMIRQHMD FDTIRSRISS QTIKSSVELF RDLLLLTNNA LVFYSKSTRE YKTVLLLRGI  360
VTKKMKETLK GTTSNKVTTQ ATNVPIKLPV HNPHVKPRSV RPGNRKIVAK AVGGNNSASG  420
VSHGTKKPSK VESPSSVESL TVKKKGFGRP KKVGRGAAGQ RPAMPMKGKK RVRTK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1204211LKKRRGKR
2205210KKRRGK
3207215RRGKRKRKD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.368270.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G244400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541744.10.0uncharacterized protein LOC100793951
RefseqXP_028191573.10.0uncharacterized protein LOC114377319
TrEMBLA0A445I9K10.0A0A445I9K1_GLYSO; Uncharacterized protein
TrEMBLI1M2A60.0I1M2A6_SOYBN; Uncharacterized protein
STRINGGLYMA13G31800.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63041723
Representative plantOGRP829569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60110.13e-31DNA-binding bromodomain-containing protein