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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.13G243200.1.p |
| Common Name | GLYMA_13G243200, LOC100792372 |
| Organism |
|
| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
NAC |
| Protein Properties |
Length: 364aa MW: 40637.1 Da PI: 8.7959 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.13G243200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 172.4 | 1.4e-53 | 19 | 147 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90
lppGfrFhPtdeelvv+yLkkk+++ +l++ ++i+evd+yk++Pw+Lp+k++ +++ewyfFs+rd+ky++g+r+nra++sgyWkatg+dk
Glyma.13G243200.1.p 19 LPPGFRFHPTDEELVVQYLKKKADSVPLPV-SIIAEVDLYKFDPWELPSKATFGDQEWYFFSPRDRKYPNGTRPNRAATSGYWKATGTDK 107
79****************************.89***************988899************************************ PP
NAM 91 evlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128
++l++ ++++vg+kk+Lvfy g+ pkg+kt+W+mheyrl
Glyma.13G243200.1.p 108 PILAShgHHNKVGVKKSLVFYGGKPPKGVKTNWIMHEYRL 147
***99777778***************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 364 aa
Download sequence Send
to blast |
MYSMDSSSSG SQFSQHPQLP PGFRFHPTDE ELVVQYLKKK ADSVPLPVSI IAEVDLYKFD 60
PWELPSKATF GDQEWYFFSP RDRKYPNGTR PNRAATSGYW KATGTDKPIL ASHGHHNKVG 120
VKKSLVFYGG KPPKGVKTNW IMHEYRLADS SSNSSSKPPS SASDHAHSGK KNSLRLDDWV 180
LCRIYKKSNS THLPRLPLME QNKEISREIS MLPMMSTLSM ANDNNTPQDS KTASSRSTSY 240
GPLGVENDDN FFDGIFGVDH QSMQQDVSDH SQQVSSKGNF PMKRELSSQF WNGTGSSSSS 300
RQFHYDLNYA GNSTTVEEDN SFVSLLSHLP QNTTTFHPNA LLGPVGNGVL RQQFQLPSMN 360
WNT*
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| 3D Structure ? help Back to Top |
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| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 1e-72 | 19 | 192 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 1e-72 | 19 | 192 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 1e-72 | 19 | 192 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 1e-72 | 19 | 192 | 17 | 170 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 1e-72 | 19 | 192 | 20 | 173 | NAC domain-containing protein 19 |
| 3swm_B | 1e-72 | 19 | 192 | 20 | 173 | NAC domain-containing protein 19 |
| 3swm_C | 1e-72 | 19 | 192 | 20 | 173 | NAC domain-containing protein 19 |
| 3swm_D | 1e-72 | 19 | 192 | 20 | 173 | NAC domain-containing protein 19 |
| 3swp_A | 1e-72 | 19 | 192 | 20 | 173 | NAC domain-containing protein 19 |
| 3swp_B | 1e-72 | 19 | 192 | 20 | 173 | NAC domain-containing protein 19 |
| 3swp_C | 1e-72 | 19 | 192 | 20 | 173 | NAC domain-containing protein 19 |
| 3swp_D | 1e-72 | 19 | 192 | 20 | 173 | NAC domain-containing protein 19 |
| 4dul_A | 1e-72 | 19 | 192 | 17 | 170 | NAC domain-containing protein 19 |
| 4dul_B | 1e-72 | 19 | 192 | 17 | 170 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Expression --
Description ? help
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| Source |
Description |
| Uniprot | DEVELOPMENTAL STAGE: Expressed during pollen development and maturation. {ECO:0000269|PubMed:21107887}. |
| Uniprot | TISSUE SPECIFICITY: Expressed specifically in the tapetum. {ECO:0000269|PubMed:21107887}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor of the NAC family. May be associated with anther development and pollen production (Probable). Required for normal seed development and morphology (PubMed:18849494). {ECO:0000269|PubMed:18849494, ECO:0000305|PubMed:21107887}. |
