PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G235300.1.p
Common NameGLYMA_13G235300, LOC100777465
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HB-other
Protein Properties Length: 1756aa    MW: 198166 Da    PI: 5.3519
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G235300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.41.2e-184297257
                         T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                          kR+  t+ qle+Le++++ ++yps+++r eL++klgL++rq ++WF+ rR k+kk
  Glyma.13G235300.1.p 42 PKRQMKTPFQLETLEKAYAVENYPSETMRVELSEKLGLSDRQLQMWFCHRRLKDKK 97
                         69****************************************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.6E-182198IPR009057Homeodomain-like
SuperFamilySSF466899.41E-173297IPR009057Homeodomain-like
PROSITE profilePS5007116.4223898IPR001356Homeobox domain
SMARTSM003893.7E-1840102IPR001356Homeobox domain
PfamPF000462.5E-164297IPR001356Homeobox domain
CDDcd000862.20E-144398No hitNo description
PROSITE profilePS5082717.206549608IPR018501DDT domain
SMARTSM005716.7E-23549608IPR018501DDT domain
PfamPF027911.0E-16551605IPR018501DDT domain
PfamPF050662.6E-16731799IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156122.1E-8941984IPR028942WHIM1 domain
PfamPF156133.8E-1311221194IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1756 aa     Download sequence    Send to blast
MEAEAENNDV KKEENSNDNN NNNNNNESNS KIGNSSEGLS KPKRQMKTPF QLETLEKAYA  60
VENYPSETMR VELSEKLGLS DRQLQMWFCH RRLKDKKELP SKKPRKAAAL PDSPVEEPKL  120
GPEVGVEYGS GSGSGSSPFA RSELRNVVPR GYYESPQTIM ELRAIACVEA QLGEPLREDG  180
PILGVEFDPL PPDAFGAPLA VTEQQKRPSL AYDSKIYERH DARANKAIAR TFHEYPFLPN  240
QSGIRSDVYG QLNLPHLHDP MDGPTRTPFP LGNEQQPRVH APQSHSSHVR LLSQQQDKLV  300
ITYPSPPRDN DVAPKREPHT NITSTGMNSH LTDHPIVGQD NPYALAGGQV SHNDAVLRME  360
RKRKSDETKV AKEVEAYEMR MRKELEKQDN LRRKSEERMR KEMERQDRER RKEEERLMRE  420
KQREEERSRR EQRREMERRE KFLLKEHLRA EKRRQKEEIR KEKEEERRKA ALEKANARRI  480
AKESMELIED EQLELMELAA ASKGLSSIIH IDLDTLQNLE SFRDSLCIFP PKSVKLRKPF  540
AIQPWIDSEQ NIGNLLMVWR FLITFADVLD LWPFTLDEFV QAFHDYDSRL LGEIHVVLLK  600
VIIKDIEDVA RTPSTGLGMN QNGAANPGGG HPEIVEGAYA WGFDIRNWQK NLNQLTWPEV  660
FRQLALSAGL GPQLKKRNIT WSYAIDKDEG KSCKDIISTL RNGSAAESAV AKMQERGLLA  720
PRRSRHRLTP GTVKFAAFHV LSLEGSKGLT VLELAEKIQK SGLRDLTTSK TPEASISVAL  780
TRDTKLFERI APSTYCVRDA FRKNPADADS ILSEARKKIQ IFENGFLAGE DADDVEREEE  840
SESDEVDEDP EDDDLVNPSS ANQNSEQYED TNICSSNGKE NLGHNVDLIQ KEFDTDLPCF  900
PKNGSKDADC PISVTRQPVA CEDLNASNLD QDNMEIDESK SGESWILGLT EGEYSDLSVE  960
ERLNALVALV GVANEGNSIR VVLEDRLESA NALKKQMWAE AQIDKVRLKD DNISKLDFPS  1020
LTGNKVETPY TYPAMEGNLS PMLDININNI NNEASPSTAE NQKGDPVAQS MPMEKCSSIQ  1080
DFGSGTGADI SQTQVSAQYS KRSRSQLKSY IAHIAEEMYV YRSLPLGQDR RRNRYWQFVA  1140
SASSNDPGSG RIFVEYHDGK WRLIDSEEAF DALLTSLDSR GIRESHLRLM LLKIENSFKE  1200
NVRKRNACCA KNGSRGEFSI KIEANEACSI PEHNAGSGSP SSTLHDLNAD PSETSSSFKI  1260
ELGKTESEKK AALRRYQDFQ KWLWKECYNS SVLCAMKYGI ERCKPQMDIC DICLNLYFVE  1320
DSHCNSCHQT FPSNNGFNFS KHAFQCRDKL SKDNCILEYS LPLRTRLLKV LLACMEVSVL  1380
SEAFETNWIN DVRKHWGIKL SKSSSVEELL QILTLFERSL RRDFLSLNFS TTDELLGSSS  1440
MSERSVQAST DPESVAVLPW VPLTTAALSL RLFEIDSSIS YVKLERLEPC EEKEAREYIK  1500
LPSRYTHMKS NREVEPAEFV HDEFTKDKSV PKKIVRNGNK RGRGTNEQGR GKKLAKRVCN  1560
SKRDGGRKNA KVTDNLSHRL KQQARGTQGQ GAGRGRRTIR KRRMGKRAVE DLLLGHTTAS  1620
HSYKIDREPV RNLDEEWDGE KASPMTPVHI GVAADNSNSA EEVESDDDNA QAVEYDQGNW  1680
EVGFNGVPPN RWSRGLVGMS DEDVDAFEEL NDNGIEENEE EDSEADVMSE GSDGIPNTVV  1740
NVGGSDSALS EDSSD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19097RRLKDKKE
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.278620.0cotyledon| hypocotyl| leaf| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269|PubMed:22694359}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G235300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150380.0AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541723.10.0homeobox-DDT domain protein RLT1 isoform X1
SwissprotF4HY560.0RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBLI1M1Z50.0I1M1Z5_SOYBN; Uncharacterized protein
STRINGGLYMA13G30860.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25233369
Representative plantOGRP15771634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44180.10.0Homeodomain-like transcriptional regulator