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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G235300.1.p | ||||||||
Common Name | GLYMA_13G235300, LOC100777465 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HB-other | ||||||||
Protein Properties | Length: 1756aa MW: 198166 Da PI: 5.3519 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 58.4 | 1.2e-18 | 42 | 97 | 2 | 57 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 kR+ t+ qle+Le++++ ++yps+++r eL++klgL++rq ++WF+ rR k+kk Glyma.13G235300.1.p 42 PKRQMKTPFQLETLEKAYAVENYPSETMRVELSEKLGLSDRQLQMWFCHRRLKDKK 97 69****************************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 3.6E-18 | 21 | 98 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 9.41E-17 | 32 | 97 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.422 | 38 | 98 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.7E-18 | 40 | 102 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.5E-16 | 42 | 97 | IPR001356 | Homeobox domain |
CDD | cd00086 | 2.20E-14 | 43 | 98 | No hit | No description |
PROSITE profile | PS50827 | 17.206 | 549 | 608 | IPR018501 | DDT domain |
SMART | SM00571 | 6.7E-23 | 549 | 608 | IPR018501 | DDT domain |
Pfam | PF02791 | 1.0E-16 | 551 | 605 | IPR018501 | DDT domain |
Pfam | PF05066 | 2.6E-16 | 731 | 799 | IPR007759 | HB1/Asxl, restriction endonuclease HTH domain |
Pfam | PF15612 | 2.1E-8 | 941 | 984 | IPR028942 | WHIM1 domain |
Pfam | PF15613 | 3.8E-13 | 1122 | 1194 | IPR028941 | WHIM2 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 1756 aa Download sequence Send to blast |
MEAEAENNDV KKEENSNDNN NNNNNNESNS KIGNSSEGLS KPKRQMKTPF QLETLEKAYA 60 VENYPSETMR VELSEKLGLS DRQLQMWFCH RRLKDKKELP SKKPRKAAAL PDSPVEEPKL 120 GPEVGVEYGS GSGSGSSPFA RSELRNVVPR GYYESPQTIM ELRAIACVEA QLGEPLREDG 180 PILGVEFDPL PPDAFGAPLA VTEQQKRPSL AYDSKIYERH DARANKAIAR TFHEYPFLPN 240 QSGIRSDVYG QLNLPHLHDP MDGPTRTPFP LGNEQQPRVH APQSHSSHVR LLSQQQDKLV 300 ITYPSPPRDN DVAPKREPHT NITSTGMNSH LTDHPIVGQD NPYALAGGQV SHNDAVLRME 360 RKRKSDETKV AKEVEAYEMR MRKELEKQDN LRRKSEERMR KEMERQDRER RKEEERLMRE 420 KQREEERSRR EQRREMERRE KFLLKEHLRA EKRRQKEEIR KEKEEERRKA ALEKANARRI 480 AKESMELIED EQLELMELAA ASKGLSSIIH IDLDTLQNLE SFRDSLCIFP PKSVKLRKPF 540 AIQPWIDSEQ NIGNLLMVWR FLITFADVLD LWPFTLDEFV QAFHDYDSRL LGEIHVVLLK 600 VIIKDIEDVA RTPSTGLGMN QNGAANPGGG HPEIVEGAYA WGFDIRNWQK NLNQLTWPEV 660 FRQLALSAGL GPQLKKRNIT WSYAIDKDEG KSCKDIISTL RNGSAAESAV AKMQERGLLA 720 PRRSRHRLTP GTVKFAAFHV LSLEGSKGLT VLELAEKIQK SGLRDLTTSK TPEASISVAL 780 TRDTKLFERI APSTYCVRDA FRKNPADADS ILSEARKKIQ IFENGFLAGE DADDVEREEE 840 SESDEVDEDP EDDDLVNPSS ANQNSEQYED TNICSSNGKE NLGHNVDLIQ KEFDTDLPCF 900 PKNGSKDADC PISVTRQPVA CEDLNASNLD QDNMEIDESK SGESWILGLT EGEYSDLSVE 960 ERLNALVALV GVANEGNSIR VVLEDRLESA NALKKQMWAE AQIDKVRLKD DNISKLDFPS 1020 LTGNKVETPY TYPAMEGNLS PMLDININNI NNEASPSTAE NQKGDPVAQS MPMEKCSSIQ 1080 DFGSGTGADI SQTQVSAQYS KRSRSQLKSY IAHIAEEMYV YRSLPLGQDR RRNRYWQFVA 1140 SASSNDPGSG RIFVEYHDGK WRLIDSEEAF DALLTSLDSR GIRESHLRLM LLKIENSFKE 1200 NVRKRNACCA KNGSRGEFSI KIEANEACSI PEHNAGSGSP SSTLHDLNAD PSETSSSFKI 1260 ELGKTESEKK AALRRYQDFQ KWLWKECYNS SVLCAMKYGI ERCKPQMDIC DICLNLYFVE 1320 DSHCNSCHQT FPSNNGFNFS KHAFQCRDKL SKDNCILEYS LPLRTRLLKV LLACMEVSVL 1380 SEAFETNWIN DVRKHWGIKL SKSSSVEELL QILTLFERSL RRDFLSLNFS TTDELLGSSS 1440 MSERSVQAST DPESVAVLPW VPLTTAALSL RLFEIDSSIS YVKLERLEPC EEKEAREYIK 1500 LPSRYTHMKS NREVEPAEFV HDEFTKDKSV PKKIVRNGNK RGRGTNEQGR GKKLAKRVCN 1560 SKRDGGRKNA KVTDNLSHRL KQQARGTQGQ GAGRGRRTIR KRRMGKRAVE DLLLGHTTAS 1620 HSYKIDREPV RNLDEEWDGE KASPMTPVHI GVAADNSNSA EEVESDDDNA QAVEYDQGNW 1680 EVGFNGVPPN RWSRGLVGMS DEDVDAFEEL NDNGIEENEE EDSEADVMSE GSDGIPNTVV 1740 NVGGSDSALS EDSSD* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 90 | 97 | RRLKDKKE |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.27862 | 0.0 | cotyledon| hypocotyl| leaf| somatic embryo |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Highly expressed in growing tissues such as inflorescence and flower meristems, young leaves and floral organs. Expressed in roots, rosette and cauline leaves, stems, flowers, inflorescences and siliques. {ECO:0000269|PubMed:22694359}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G235300.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003541723.1 | 0.0 | homeobox-DDT domain protein RLT1 isoform X1 | ||||
Swissprot | F4HY56 | 0.0 | RLT1_ARATH; Homeobox-DDT domain protein RLT1 | ||||
TrEMBL | I1M1Z5 | 0.0 | I1M1Z5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G30860.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2523 | 33 | 69 |
Representative plant | OGRP1577 | 16 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G44180.1 | 0.0 | Homeodomain-like transcriptional regulator |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G235300.1.p |
Entrez Gene | 100777465 |