PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G234700.1.p
Common NameGLYMA_13G234700, LOC100791680
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NAC
Protein Properties Length: 333aa    MW: 37362.3 Da    PI: 8.6034
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G234700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM106.43.6e-33732141128
                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkklelee.......vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk... 79 
                          lp+G++F+P+d+e++ e+L++kv+++ ++l+        +++   +i++++P++Lp  v+++ +  +fF++ +k+y+tg+rk+r+++   
  Glyma.13G234700.1.p  73 LPAGVKFDPNDQEIL-EHLEAKVASDACKLHPlidefipTLEGEnGICYTHPEKLP-GVSKDGQIRHFFHRPSKAYTTGTRKRRKVHtdd 160
                          799***********9.99********95553333333222333336**********.555666777******************755557 PP

                  NAM  80 ...sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                             + +W++tgk+++v++++g+++g kk+Lv+y   gr++k+ekt Wvmh+y+l
  Glyma.13G234700.1.p 161 egiETRWHKTGKTRAVFASGGAVKGFKKILVLYtnYGRQKKPEKTYWVMHQYHL 214
                          666778***************************6658***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019416.8E-3568233IPR003441NAC domain
PROSITE profilePS5100532.70473233IPR003441NAC domain
PfamPF023652.6E-1474214IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 333 aa     Download sequence    Send to blast
MCKCIGKLTK NKMTWCNDSD ENRVIESITP RITITPNTDD KKLTQEIRTT ACPSCGHNIA  60
FKDKGGIHDL PGLPAGVKFD PNDQEILEHL EAKVASDACK LHPLIDEFIP TLEGENGICY  120
THPEKLPGVS KDGQIRHFFH RPSKAYTTGT RKRRKVHTDD EGIETRWHKT GKTRAVFASG  180
GAVKGFKKIL VLYTNYGRQK KPEKTYWVMH QYHLGNTEEE KDGELVVSKV FYQTQPRQCV  240
NPIIIKDPYE KMLNGGSVQD STNTSITKTT ATLLDCYNAP YIDYDHAHAS HNRESSSQLI  300
IPSSVVQVDG SYIRSTMDAK KARFESNTGK SF*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.603310.0cotyledon| flower| leaf| root| seed coat| somatic embryo
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in protoxylem and elongating interfascicular fiber cells of elongating internodes, developing metaxylem cells and interfascicular fibers of non-elongating internodes and developing secondary xylem of roots. {ECO:0000269|PubMed:18952777}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G234700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0312200.0KT031220.1 Glycine max clone HN_CCL_58 NAC transcription factor (Glyma15g08480.4) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003543021.10.0NAC domain-containing protein 73
RefseqXP_028188469.10.0NAC domain-containing protein 73-like
SwissprotO494591e-117NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A445I8V70.0A0A445I8V7_GLYSO; NAC domain-containing protein 73
TrEMBLI1M1Y60.0I1M1Y6_SOYBN; Uncharacterized protein
STRINGGLYMA13G30800.40.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF122834108
Representative plantOGRP5251585
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G28500.11e-119NAC domain containing protein 73
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]