PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G227100.1.p
Common NameGLYMA_13G227100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ERF
Protein Properties Length: 738aa    MW: 80849.4 Da    PI: 8.6151
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G227100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.34e-182372255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++ GVr+++ +grWvAeI+d      ++ r +lg+++tae+Aa+a+++a+++l+g
  Glyma.13G227100.1.p 23 RFVGVRQRP-SGRWVAEIKD----SlQKVRLWLGTYDTAEDAARAYDNAARALRG 72
                         689******.7*********....4456*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.6E-282380IPR001471AP2/ERF domain
CDDcd000184.48E-302380No hitNo description
SMARTSM003802.2E-362386IPR001471AP2/ERF domain
PfamPF008472.7E-122372IPR001471AP2/ERF domain
PROSITE profilePS5103220.5082380IPR001471AP2/ERF domain
PRINTSPR003679.0E-72435IPR001471AP2/ERF domain
SuperFamilySSF541712.09E-192480IPR016177DNA-binding domain
PRINTSPR003679.0E-74662IPR001471AP2/ERF domain
PfamPF008921.2E-13375513IPR000620EamA domain
SuperFamilySSF1034812.09E-7407517No hitNo description
PfamPF008921.7E-15552690IPR000620EamA domain
SuperFamilySSF1034812.88E-7615694No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0055085Biological Processtransmembrane transport
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 738 aa     Download sequence    Send to blast
MGAMSDNGIS RSRKKSSSRG HHRFVGVRQR PSGRWVAEIK DSLQKVRLWL GTYDTAEDAA  60
RAYDNAARAL RGSNARTNFE LPESASSGGA NKRGGSKFVP ECTEPFSFED VNEPGSDAEG  120
LLGALKAKLL DGKKGKFDQF QFLGNSAAQV VQSGMVSRSS QNCSGKKELL LPIPSSSAND  180
TVLTRMNYGT GTSPVHGVMS TLASSNTCAN KSVVIPNHDY HEGAVASTSS GRVNSHQLCQ  240
TPPVATWPSE VAYDLPWPTQ YMSQVLPDNG LLASSSTAAA TLTNIWPLSG VIESTVDMTC  300
MDQGPSSSNK SGQMMNMVSM QLPLVGGANE GLWTLEQQQF VQCDQNNSWF SFNGSWDPLL  360
YLKMRSTCDE WKPFIVMIAI DFSFAAVNIL LKKVLEEGMN HLVFITYRLS IATIFIAPIC  420
YFRERNDRPR LTFRILCYLF CSAIVGASVT QYFFLMGIQY TSATFSCAFI NMVPVVTFMM  480
ALPFGLETVK IKCKSGRAKI LGSLVCIGGA LMLTLYKGKP LFNFSHYESV SPVANSSAVN  540
LASTRTKGKW TIGVIALVLG TIFWSSWFIL QSKISKRYPC QYSSTAIMSF FGAIQSAVIC  600
FFTDHNLSIW VLKGKIQIIA ILYAGMIGSG LCFVGMSWCV KKRGPVFTAA FSPLVQIMAA  660
MIDIPVLHEQ LHLGSVMGSI LVIIGLYILL WGKSMEMQNR VVKLVQEAEE TKEQEPQPQI  720
QQLTVYVHAE SCDSQCH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A3e-1521881280Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G227100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0941440.0BT094144.1 Soybean clone JCVI-FLGm-18A22 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001357884.10.0WAT1-related protein At3g30340-like
RefseqXP_028189989.10.0WAT1-related protein At3g30340-like
TrEMBLA0A0R0H0Y30.0A0A0R0H0Y3_SOYBN; Uncharacterized protein
STRINGGLYMA13G29930.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP121222
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.11e-17related to AP2 11