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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G226800.1.p | ||||||||
Common Name | GLYMA_13G226800 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | MYB_related | ||||||||
Protein Properties | Length: 236aa MW: 27257.5 Da PI: 10.2197 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.9 | 2.2e-08 | 90 | 117 | 18 | 47 |
HTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 18 qlGggtWktIartmgkgRtlkqcksrwqky 47 +l ++ W++I +++ gRt++++k++w++y Glyma.13G226800.1.p 90 KLKKR-WSLIVGRLP-GRTPNDVKNYWNTY 117 67777.*********.************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.281 | 75 | 122 | IPR017930 | Myb domain |
Pfam | PF00249 | 2.6E-6 | 90 | 117 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-11 | 90 | 124 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 3.74E-7 | 91 | 123 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.12E-5 | 92 | 118 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MIKTYPWTLK IIDKERIRII NREHETSSGI VLAYAPPTLF YGISKIWCDY YLLYIGLLYY 60 NMIALDRISA KNINQRELKR SKFNILQESK LKKRWSLIVG RLPGRTPNDV KNYWNTYIRR 120 KVSSSHKVVI NEKQEKTTVK PHVVIKPKAR TFSRPSPSGL RGSNVLREEG GESGAKHCST 180 HHQACAASSE CINNWSTDQW WKTMMHDKGD NLDNNQCLLA YQDEVGKLKF IILLS* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G226800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT090299 | 1e-180 | BT090299.1 Soybean clone JCVI-FLGm-4K7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003541690.1 | 1e-103 | transcription factor MYB111 | ||||
Refseq | XP_028186595.1 | 1e-103 | transcription factor MYB111-like | ||||
TrEMBL | K7M188 | 1e-175 | K7M188_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G29891.1 | 1e-175 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF16722 | 7 | 8 |
Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09460.1 | 1e-11 | myb domain protein 6 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G226800.1.p |