PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G223300.2.p
Common NameGLYMA_13G223300
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MIKC_MADS
Protein Properties Length: 230aa    MW: 25875.1 Da    PI: 10.2096
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G223300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF99.41.4e-312473150
                         S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
               SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                         krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  Glyma.13G223300.2.p 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 73
                         79***********************************************8 PP
2K-box83.54.7e-2892181593
                K-box   5 sgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93 
                          sg   ++ea+a+ +qqe++kL+++i+nLq+++R+++G++L+sL+ k+L++Le++Lek++++iRskK+  l+++ + l+ k  e ++++++
  Glyma.13G223300.2.p  92 SGAGsASEANAQFYQQEADKLRQQISNLQNNNRQMMGDSLGSLTAKDLKNLETKLEKGISRIRSKKEIDLHNNNQLLRAKIAESERNHHN 181
                          33445899************************************************************************9999999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.1E-421675IPR002100Transcription factor, MADS-box
PROSITE profilePS5006634.1321676IPR002100Transcription factor, MADS-box
CDDcd002653.60E-451786No hitNo description
SuperFamilySSF554552.62E-331789IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-331838IPR002100Transcription factor, MADS-box
PROSITE patternPS0035001872IPR002100Transcription factor, MADS-box
PfamPF003198.2E-272572IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-333853IPR002100Transcription factor, MADS-box
PRINTSPR004043.8E-335374IPR002100Transcription factor, MADS-box
PfamPF014869.8E-2199181IPR002487Transcription factor, K-box
PROSITE profilePS5129711.854102197IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0048440Biological Processcarpel development
GO:0048443Biological Processstamen development
GO:0048497Biological Processmaintenance of floral organ identity
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 230 aa     Download sequence    Send to blast
MAFPDPSMSV SPQRKMGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL  60
IVFSSRGRLY EYANNSVKAT IERYKKASSD SSGAGSASEA NAQFYQQEAD KLRQQISNLQ  120
NNNRQMMGDS LGSLTAKDLK NLETKLEKGI SRIRSKKEID LHNNNQLLRA KIAESERNHH  180
NMAVLPGGSN YDSMQSSQQQ FDSRGYFQVT GLQPNNQYAR QDQMSLQLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-211688173Myocyte-specific enhancer factor 2B
1tqe_Q1e-211688173Myocyte-specific enhancer factor 2B
1tqe_R1e-211688173Myocyte-specific enhancer factor 2B
1tqe_S1e-211688173Myocyte-specific enhancer factor 2B
6c9l_A1e-211688173Myocyte-specific enhancer factor 2B
6c9l_B1e-211688173Myocyte-specific enhancer factor 2B
6c9l_C1e-211688173Myocyte-specific enhancer factor 2B
6c9l_D1e-211688173Myocyte-specific enhancer factor 2B
6c9l_E1e-211688173Myocyte-specific enhancer factor 2B
6c9l_F1e-211688173Myocyte-specific enhancer factor 2B
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.268440.0seed coat
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Flower. Preferentially expressed in stamen and carpel and weakly in petal. Undetected in leaves and roots.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00609ChIP-seqTransfer from AT4G18960Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G223300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3828330.0AY382833.1 Glycine max MADS-box protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001237504.11e-156MADS-box protein
RefseqXP_028188360.11e-156floral homeotic protein AGAMOUS-like isoform X1
RefseqXP_028188361.11e-156floral homeotic protein AGAMOUS-like isoform X1
RefseqXP_028188362.11e-156floral homeotic protein AGAMOUS-like isoform X2
SwissprotQ408721e-120AG_PANGI; Floral homeotic protein AGAMOUS
TrEMBLA0A0R0GS721e-169A0A0R0GS72_SOYBN; Uncharacterized protein
STRINGGLYMA13G29510.11e-155(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-98MIKC_MADS family protein