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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Glyma.13G223300.1.p |
Common Name | GLYMA_13G223300, LOC732595 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family |
MIKC_MADS |
Protein Properties |
Length: 244aa MW: 27641.2 Da PI: 10.0561 |
Description |
MIKC_MADS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.13G223300.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | SRF-TF | 99.3 | 1.5e-31 | 24 | 73 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
krien++nrqvtf+kRrng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
Glyma.13G223300.1.p 24 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 73
79***********************************************8 PP
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2 | K-box | 116.2 | 3.1e-38 | 92 | 188 | 5 | 100 |
K-box 5 sgks.leeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenka 93
sg ++ea+a+ +qqe++kL+++i+nLq+++R+++G++L+sL+ k+L++Le++Lek++++iRskKnell+++ie++qk+e +l+++n+
Glyma.13G223300.1.p 92 SGAGsASEANAQFYQQEADKLRQQISNLQNNNRQMMGDSLGSLTAKDLKNLETKLEKGISRIRSKKNELLFAEIEYMQKREIDLHNNNQL 181
33445899********************************************************************************** PP
K-box 94 Lrkklee 100
Lr+k++e
Glyma.13G223300.1.p 182 LRAKIAE 188
****986 PP
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Protein Features
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Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
SMART | SM00432 | 1.1E-42 | 16 | 75 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 34.132 | 16 | 76 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 6.07E-45 | 17 | 86 | No hit | No description |
SuperFamily | SSF55455 | 3.01E-33 | 17 | 89 | IPR002100 | Transcription factor, MADS-box |
PROSITE pattern | PS00350 | 0 | 18 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-33 | 18 | 38 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 9.0E-27 | 25 | 72 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-33 | 38 | 53 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.4E-33 | 53 | 74 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 3.8E-28 | 99 | 186 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 15.106 | 102 | 192 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0048366 | Biological Process | leaf development |
GO:0048440 | Biological Process | carpel development |
GO:0048443 | Biological Process | stamen development |
GO:0048497 | Biological Process | maintenance of floral organ identity |
GO:0005634 | Cellular Component | nucleus |
GO:0003677 | Molecular Function | DNA binding |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
Protein Sequence Length: 244 aa
Download sequence Send
to blast |
MAFPDPSMSV SPQRKMGRGK IEIKRIENTT NRQVTFCKRR NGLLKKAYEL SVLCDAEVAL 60 IVFSSRGRLY EYANNSVKAT IERYKKASSD SSGAGSASEA NAQFYQQEAD KLRQQISNLQ 120 NNNRQMMGDS LGSLTAKDLK NLETKLEKGI SRIRSKKNEL LFAEIEYMQK REIDLHNNNQ 180 LLRAKIAESE RNHHNMAVLP GGSNYDSMQS SQQQFDSRGY FQVTGLQPNN QYARQDQMSL 240 QLV*
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3D Structure ? help Back to Top |
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PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1tqe_P | 2e-21 | 16 | 88 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_Q | 2e-21 | 16 | 88 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_R | 2e-21 | 16 | 88 | 1 | 73 | Myocyte-specific enhancer factor 2B |
1tqe_S | 2e-21 | 16 | 88 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_A | 2e-21 | 16 | 88 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_B | 2e-21 | 16 | 88 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_C | 2e-21 | 16 | 88 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_D | 2e-21 | 16 | 88 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_E | 2e-21 | 16 | 88 | 1 | 73 | Myocyte-specific enhancer factor 2B |
6c9l_F | 2e-21 | 16 | 88 | 1 | 73 | Myocyte-specific enhancer factor 2B |
Search in ModeBase |
Expression --
Description ? help
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Source |
Description |
Uniprot | TISSUE SPECIFICITY: Flower. Preferentially expressed in stamen and carpel and weakly in petal. Undetected in leaves and roots. |
Functional Description ? help
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Source |
Description |
UniProt | Probable transcription factor involved in regulating genes that determines stamen and carpel development in wild-type flowers. {ECO:0000250}. |