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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G221400.1.p | ||||||||
Common Name | GLYMA_13G221400, LOC100798719 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | ARF | ||||||||
Protein Properties | Length: 897aa MW: 99837.2 Da PI: 6.7557 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 77.8 | 1.2e-24 | 127 | 228 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 f+k+lt sd++++g +++p++ ae+ +++++ ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F Glyma.13G221400.1.p 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI 214 99*****************************8544444..48************************************************ PP E-SSSEE..EEEEE-S CS B3 84 ldgrsefelvvkvfrk 99 ++++ +l+++++r+ Glyma.13G221400.1.p 215 --WNEKNQLLLGIRRA 228 ..8899999****997 PP | |||||||
2 | Auxin_resp | 121.1 | 8.6e-40 | 253 | 336 | 1 | 83 |
Auxin_resp 1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrW+nS+Wrs+k Glyma.13G221400.1.p 253 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVK 336 79*********************************9789******************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 4.58E-49 | 112 | 256 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 6.2E-43 | 120 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.83E-22 | 126 | 227 | No hit | No description |
Pfam | PF02362 | 3.5E-23 | 127 | 228 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-25 | 127 | 229 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.14 | 127 | 229 | IPR003340 | B3 DNA binding domain |
Pfam | PF06507 | 1.8E-34 | 253 | 336 | IPR010525 | Auxin response factor |
Pfam | PF02309 | 2.9E-6 | 761 | 848 | IPR033389 | AUX/IAA domain |
SuperFamily | SSF54277 | 1.05E-5 | 763 | 838 | No hit | No description |
PROSITE profile | PS51745 | 21.845 | 763 | 847 | IPR000270 | PB1 domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 897 aa Download sequence Send to blast |
MRLSSAGFSP PPQEGENRVL DSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAVSTNKE 60 VDAHIPNYPS LPPQLICQLH NMTMHADAET DEVYAQMTLQ PLNPQEQKEA YLPAELGTPS 120 KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHGNEWKFR 180 HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL 240 SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM 300 LFETEESSVR RYMGTITGIS DLDPVRWQNS HWRSVKVGWD ESTAGDRQPR VSLWEIEPLT 360 TFPMYPSPFP LRLKRPWPPG LPSFHAGMKD DDFGPNSPLL WLRDPDRGLP SLNFQGIGIN 420 PWMQPRFDPT MLNMQTDMYQ AAAVQDMRSL DPSKQHSASL LPFQQPQNFP NRTAALMQAQ 480 MLQQSQPQQI FGNTQENQHS PQSQAHLQQH LQHQHSFNSQ HHHHHQQQQQ RQQHQVVDNQ 540 QISSAVSTMS QFVSAPQPQS PPMQVISSMC QQQNFSDSNG NTVTTIVSPL HSILGSFPQD 600 ETSHLLNLPR TSSWIPVQNS SGWPSKRVAV DPLLSSGASQ CVLPQVEQLG QPQSTMSQNA 660 ISLPPFPGRE CSIDQEGSND PQNHLLFGVN IEPSSLLMPN GMSSLKGVCG NNGSSTLPYQ 720 SSNYLNTTTR TDSSLNHGMT PNIGDSGFLQ CLEEAGQGNP LNKTFVKVYK SGSFGRSLDI 780 TKFSSYHELR GELARMFGLE GELEDPVRSG WQLVFVDREN DVLLLGDGPW PEFVNSVWCI 840 KILSPQEVQQ MGNNGLELLN SFPIQRLSNG ICDDYVSRQD PRNLGTGITT VGSLDY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4ldu_A | 1e-160 | 19 | 357 | 50 | 388 | Auxin response factor 5 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.59213 | 0.0 | flower| hypocotyl| leaf| meristem| pod |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). | |||||
UniProt | Auxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G221400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006594517.1 | 0.0 | auxin response factor 6 isoform X1 | ||||
Swissprot | A2X1A1 | 0.0 | ARFF_ORYSI; Auxin response factor 6 | ||||
Swissprot | Q6H6V4 | 0.0 | ARFF_ORYSJ; Auxin response factor 6 | ||||
TrEMBL | I1M1J4 | 0.0 | I1M1J4_SOYBN; Auxin response factor | ||||
STRING | GLYMA13G29320.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1765 | 34 | 88 | Representative plant | OGRP856 | 14 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30330.1 | 0.0 | auxin response factor 6 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G221400.1.p |
Entrez Gene | 100798719 |
Publications ? help Back to Top | |||
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