PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G221400.1.p
Common NameGLYMA_13G221400, LOC100798719
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 897aa    MW: 99837.2 Da    PI: 6.7557
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G221400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.81.2e-24127228199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++g++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F 
  Glyma.13G221400.1.p 127 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHGNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI 214
                          99*****************************8544444..48************************************************ PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            ++++ +l+++++r+
  Glyma.13G221400.1.p 215 --WNEKNQLLLGIRRA 228
                          ..8899999****997 PP
2Auxin_resp121.18.6e-40253336183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                          aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdldpvrW+nS+Wrs+k
  Glyma.13G221400.1.p 253 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDPVRWQNSHWRSVK 336
                          79*********************************9789******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019364.58E-49112256IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.106.2E-43120242IPR015300DNA-binding pseudobarrel domain
CDDcd100171.83E-22126227No hitNo description
PfamPF023623.5E-23127228IPR003340B3 DNA binding domain
SMARTSM010191.8E-25127229IPR003340B3 DNA binding domain
PROSITE profilePS5086313.14127229IPR003340B3 DNA binding domain
PfamPF065071.8E-34253336IPR010525Auxin response factor
PfamPF023092.9E-6761848IPR033389AUX/IAA domain
SuperFamilySSF542771.05E-5763838No hitNo description
PROSITE profilePS5174521.845763847IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 897 aa     Download sequence    Send to blast
MRLSSAGFSP PPQEGENRVL DSELWHACAG PLVSLPAVGS RVVYFPQGHS EQVAVSTNKE  60
VDAHIPNYPS LPPQLICQLH NMTMHADAET DEVYAQMTLQ PLNPQEQKEA YLPAELGTPS  120
KQPTNYFCKT LTASDTSTHG GFSVPRRAAE KVFPPLDFSQ QPPAQELIAR DLHGNEWKFR  180
HIFRGQPKRH LLTTGWSVFV SAKRLVAGDS VLFIWNEKNQ LLLGIRRANR PQTVMPSSVL  240
SSDSMHLGLL AAAAHAAATN SRFTIFYNPR ASPSEFVIPL AKYVKAVYHT RVSVGMRFRM  300
LFETEESSVR RYMGTITGIS DLDPVRWQNS HWRSVKVGWD ESTAGDRQPR VSLWEIEPLT  360
TFPMYPSPFP LRLKRPWPPG LPSFHAGMKD DDFGPNSPLL WLRDPDRGLP SLNFQGIGIN  420
PWMQPRFDPT MLNMQTDMYQ AAAVQDMRSL DPSKQHSASL LPFQQPQNFP NRTAALMQAQ  480
MLQQSQPQQI FGNTQENQHS PQSQAHLQQH LQHQHSFNSQ HHHHHQQQQQ RQQHQVVDNQ  540
QISSAVSTMS QFVSAPQPQS PPMQVISSMC QQQNFSDSNG NTVTTIVSPL HSILGSFPQD  600
ETSHLLNLPR TSSWIPVQNS SGWPSKRVAV DPLLSSGASQ CVLPQVEQLG QPQSTMSQNA  660
ISLPPFPGRE CSIDQEGSND PQNHLLFGVN IEPSSLLMPN GMSSLKGVCG NNGSSTLPYQ  720
SSNYLNTTTR TDSSLNHGMT PNIGDSGFLQ CLEEAGQGNP LNKTFVKVYK SGSFGRSLDI  780
TKFSSYHELR GELARMFGLE GELEDPVRSG WQLVFVDREN DVLLLGDGPW PEFVNSVWCI  840
KILSPQEVQQ MGNNGLELLN SFPIQRLSNG ICDDYVSRQD PRNLGTGITT VGSLDY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1601935750388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.592130.0flower| hypocotyl| leaf| meristem| pod
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G221400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006594517.10.0auxin response factor 6 isoform X1
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLI1M1J40.0I1M1J4_SOYBN; Auxin response factor
STRINGGLYMA13G29320.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Representative plantOGRP8561456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]