PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Cis-element |

Basic Information? help Back to Top

TF ID

Glyma.13G218900.1.p

Common Name

GLYMA_13G218900, LOC102668744

Organism

Glycine max

Taxonomic ID

3847

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

C2H2

Protein Properties

Length: 424aa MW: 47208.7 Da PI: 8.0652

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.13G218900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.8	0.0016	21	41	3	23
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C++C++ F + + L+ H ++H Glyma.13G218900.1.p 21 CSYCDRAFDNYEGLEDHKKMH 41 88*****************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.951	19	46	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	20	41	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 424 aa Download sequence Send to blast
MNTSSAFDKE NAKGKEKCNC CSYCDRAFDN YEGLEDHKKM HEAEFKRLVN QSNPFHNSMD 60 ITKPIFGYGN VSMKTLYGGT TINPCVTKGN CYGDNNRGDH NSLFMTSSYS FTRTNNASLV 120 ASLPNKEIDP CVMKGNCYGG NSRGDHNSLF MPSNYSFTSS NNASLVAPIP TKGIPCVTKG 180 NCYGGNSQGD RNSLFIPPNY SFTRTNNESL VATIPTKGTI PFSQYVNHPI YMGSSNNYIG 240 HTPSASSGIS HQFDASNSQF FIDDFTIPFR SKFQNIKPNG SHLPYPISVR NPSLPGYHMT 300 ERGLSIFPYS IKPFFVDTQT HSISLNNIHQ IYERVKKHNR DEVQEKSSMM NPPKRPNINY 360 GPLVCHEREM LQKNESLFST KDAKLKAIGA IVFNDEGKIG STSESKNNTK EQEDDDLDLS 420 LHL*

Sequence ? help Back to Top

Protein Sequence Length: 424 aa Download sequence Send to blast

MNTSSAFDKE NAKGKEKCNC CSYCDRAFDN YEGLEDHKKM HEAEFKRLVN QSNPFHNSMD  60
ITKPIFGYGN VSMKTLYGGT TINPCVTKGN CYGDNNRGDH NSLFMTSSYS FTRTNNASLV  120
ASLPNKEIDP CVMKGNCYGG NSRGDHNSLF MPSNYSFTSS NNASLVAPIP TKGIPCVTKG  180
NCYGGNSQGD RNSLFIPPNY SFTRTNNESL VATIPTKGTI PFSQYVNHPI YMGSSNNYIG  240
HTPSASSGIS HQFDASNSQF FIDDFTIPFR SKFQNIKPNG SHLPYPISVR NPSLPGYHMT  300
ERGLSIFPYS IKPFFVDTQT HSISLNNIHQ IYERVKKHNR DEVQEKSSMM NPPKRPNINY  360
GPLVCHEREM LQKNESLFST KDAKLKAIGA IVFNDEGKIG STSESKNNTK EQEDDDLDLS  420
LHL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.13G218900.1.p

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006594503.1	0.0	uncharacterized protein LOC102668744
Refseq	XP_028186900.1	0.0	uncharacterized protein LOC114373602
TrEMBL	A0A0R0H4J2	0.0	A0A0R0H4J2_SOYBN; Uncharacterized protein
STRING	GLYMA04G13901.1	0.0	(Glycine max)

Link Out ? help Back to Top
Phytozome	Glyma.13G218900.1.p
Entrez Gene	102668744