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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.13G211200.1.p |
| Common Name | GLYMA_13G211200, LOC100816656 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
FAR1 |
| Protein Properties |
Length: 763aa MW: 88087.9 Da PI: 7.7529 |
| Description |
FAR1 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.13G211200.1.p | genome | JGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | FAR1 | 60.5 | 5.2e-19 | 43 | 117 | 1 | 89 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHel 89
k+Y +YA+++GF+vr+ + ++s+++g++ +r+fvCskeg++ + +rt+C a ++v+++ +gkw+v++++++HnH+l
Glyma.13G211200.1.p 43 KYYTSYANRTGFKVRIGQLYRSRTDGSVSSRRFVCSKEGHQLS--------------SRTDCPAFIRVQLNGSGKWVVDHFHKDHNHHL 117
69*************************************8765..............5899**************************99 PP
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| 2 | FAR1 | 65.7 | 1.3e-20 | 199 | 274 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
+fY++YA ++GF vr+ + +sk++g+it+r+fvCskeg++++ +r+gC a l++k++ +gkw v++l+++HnH+l
Glyma.13G211200.1.p 199 QFYHAYAAHLGFGVRIGQLFRSKNDGSITSRRFVCSKEGFQHP--------------SRVGCGAYLRIKRQPSGKWIVDRLRKDHNHDLD 274
6***************************************999..............4899**************************996 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 763 aa
Download sequence Send
to blast |
MIVKDHFVGT ELAMSNTCVE EGIDFSCDPY IGLEFDTADE ALKYYTSYAN RTGFKVRIGQ 60
LYRSRTDGSV SSRRFVCSKE GHQLSSRTDC PAFIRVQLNG SGKWVVDHFH KDHNHHLEIS 120
GENCTPTLQP KGAGATVINS LTEFPRRTRK KLLEEANDES SCPFGIIDFK RLRKEELEGQ 180
SRTEPYVGQE FSSPNEAYQF YHAYAAHLGF GVRIGQLFRS KNDGSITSRR FVCSKEGFQH 240
PSRVGCGAYL RIKRQPSGKW IVDRLRKDHN HDLDSEKVGR AKSLPASNIL AEEVDTGLLN 300
GDLFRIDNYP VPRGGRQNHI RSEWYGILLE YFQSRQAEDT GFFYAMEVDN GNCMNIFWAD 360
GRSRYSCSHF GDVLVLDTSY RKTVYLVPFA TFVGVNHHKQ PVLLGCALIA DESEESFTWL 420
FQTWLRAMSG RLPLTVIADQ DIAIQRAIAK VFPVTHHRFS LWQIKAKEQE NMGLMGNGFT 480
KDYEKCVYQS QTVDEFDATW NVLLNKYGLK DDAWLKEMYQ KRASWVPLYL KGTFFAGIPM 540
NESLDSFFGA LLNAQTPLME FIPRYERGLE RRREEERKED FNTSNFQPIL QTKEPVEEQC 600
RRLYTLTVFK IFQKELLQCF SYLGFKIFEE GGLSRYMVRR CGNDMEKHVV TFNASNLSIS 660
CSCQMFEYEG VLCRHVLRVF QILQLREVPS RYILHRWTRN AEDGVFPDME SWSSSQELKN 720
LMLWSLRETA SKYIDAGATS FEKYKLAFEI LREGGRKLCW HR*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Putative transcription activator involved in regulating light control of development. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015038 | 0.0 | AP015038.1 Vigna angularis var. angularis DNA, chromosome 5, almost complete sequence, cultivar: Shumari. |
