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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G207500.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NF-YC | ||||||||
Protein Properties | Length: 244aa MW: 27208.9 Da PI: 7.2708 | ||||||||
Description | NF-YC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YC | 131.2 | 3.3e-41 | 61 | 161 | 1 | 98 |
NF-YC 1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtd 87 ql +fw+k+ ie++t fk h+lPlarikki+k +e v+m+saea v+++kace+f++elt+r+ aeen+r+ +kk+d+a+a++rtd Glyma.13G207500.2.p 61 QLTNFWAKKrqeIEETTSFKTHSLPLARIKKIMKGEEGVRMVSAEASVVFAKACEMFMMELTIRASGSAEENQRKIIKKCDVASAISRTD 150 799***9877789***************************************************************************** PP NF-YC 88 ifdflvdivpr 98 +fdflvdiv Glyma.13G207500.2.p 151 VFDFLVDIVSG 161 ********975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47113 | 2.42E-26 | 67 | 155 | IPR009072 | Histone-fold |
Pfam | PF00808 | 1.0E-16 | 83 | 146 | IPR003958 | Transcription factor CBF/NF-Y/archaeal histone domain |
Gene3D | G3DSA:1.10.20.10 | 4.5E-28 | 84 | 160 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 244 aa Download sequence Send to blast |
MDQNQHDRLA QEAQYQSNPM MAPTILPTQT YGHSLSSSYP RLHPYDPQAM YQLRQEPLQQ 60 QLTNFWAKKR QEIEETTSFK THSLPLARIK KIMKGEEGVR MVSAEASVVF AKACEMFMME 120 LTIRASGSAE ENQRKIIKKC DVASAISRTD VFDFLVDIVS GHNKIMEQQG FVGIPRIGTA 180 LTPTENVPYY QMPPHQSLVP GPPYGSSGMV VGMPVHYQNH PGLQTPTMGP TPNPQNSSRD 240 SDS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5g49_B | 3e-40 | 71 | 159 | 5 | 93 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G207500.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_014621214.1 | 0.0 | nuclear transcription factor Y subunit C-3 | ||||
Refseq | XP_028187172.1 | 0.0 | nuclear transcription factor Y subunit C-3-like | ||||
TrEMBL | A0A445I7Q6 | 0.0 | A0A445I7Q6_GLYSO; Nuclear transcription factor Y subunit C-3 | ||||
TrEMBL | I1M133 | 0.0 | I1M133_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G27770.2 | 0.0 | (Glycine max) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G54830.3 | 3e-49 | nuclear factor Y, subunit C3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G207500.2.p |