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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
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| TF ID |
Glyma.13G203700.2.p |
| Common Name | GLYMA_13G203700 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
C2H2 |
| Protein Properties |
Length: 327aa MW: 36431.4 Da PI: 7.6913 |
| Description |
C2H2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.13G203700.2.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-C2H2 | 21.2 | 7.5e-07 | 165 | 184 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20
++Cp C+k+F+r nL+ H+
Glyma.13G203700.2.p 165 FPCPVCSKTFNRYNNLQMHM 184
89*****************9 PP
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| 2 | zf-C2H2 | 15.5 | 4.9e-05 | 249 | 271 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23
y C +Cgk F k + ++H +++
Glyma.13G203700.2.p 249 YMCRKCGKAFAVKGDWRTHEKNC 271
89*****************9987 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 327 aa
Download sequence Send
to blast |
MNGSTSCSSI LTTPPLLNPI TLLLIITQTT TAPPSSPPLR VALPLINKIS LKSSEQHQQN 60
ETSSNVLEEK EEDEKKVDNN NKHHESGEDA DEETVTVALH IGLPRMDTSS SSDLGPPKVV 120
STTCMEIGEK GEVNMISEHP LDHRLNKGQY WIPTPSQILI GPTQFPCPVC SKTFNRYNNL 180
QMHMWGHGSQ YRKGPDSLKG TQPTAMLRLP CFCCAPGCKH NIDHPRARPL KDFRTLQTHY 240
KRKHGIKPYM CRKCGKAFAV KGDWRTHEKN CGKIWYCLCG SDFKHKRSLK DHIKAFGFGH 300
GSFGIDCLQE EDEAASDIEH DGESSM*
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| Expression --
Description ? help
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| Source |
Description |
| Uniprot | TISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}. |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AP015039 | 0.0 | AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari. |
