PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G203700.1.p
Common NameGLYMA_13G203700, LOC100799060
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 358aa    MW: 40208.1 Da    PI: 7.5828
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G203700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.18.4e-07196215120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          ++Cp C+k+F+r  nL+ H+
  Glyma.13G203700.1.p 196 FPCPVCSKTFNRYNNLQMHM 215
                          89*****************9 PP
2zf-C2H215.45.4e-05280302123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y C +Cgk F  k + ++H +++
  Glyma.13G203700.1.p 280 YMCRKCGKAFAVKGDWRTHEKNC 302
                          89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.69E-6192218No hitNo description
PROSITE profilePS5015710.616196223IPR007087Zinc finger, C2H2
PfamPF139123.0E-5196215IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.0E-6196215IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.034196218IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280198218IPR007087Zinc finger, C2H2
SuperFamilySSF576671.04E-6264300No hitNo description
Gene3DG3DSA:3.30.160.601.5E-6276300IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.974280300IPR007087Zinc finger, C2H2
SMARTSM0035540280300IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 358 aa     Download sequence    Send to blast
MTDPQSNLFH EWFNFMLLHP HYSSSSQSNY PLANNYSNNN RFGIQLQQGA PSSSSSSSSF  60
YAAPPSSPPL RVALPLINKI SLKSSEQHQQ NETSSNVLEE KEEDEKKVDN NNKHHESGED  120
ADEETVTVAL HIGLPRMDTS SSSDLGPPKV VSTTCMEIGE KGEVNMISEH PLDHRLNKGQ  180
YWIPTPSQIL IGPTQFPCPV CSKTFNRYNN LQMHMWGHGS QYRKGPDSLK GTQPTAMLRL  240
PCFCCAPGCK HNIDHPRARP LKDFRTLQTH YKRKHGIKPY MCRKCGKAFA VKGDWRTHEK  300
NCGKIWYCLC GSDFKHKRSL KDHIKAFGFG HGSFGIDCLQ EEDEAASDIE HDGESSM*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G203700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150390.0AP015039.1 Vigna angularis var. angularis DNA, chromosome 6, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541613.10.0zinc finger protein WIP2
RefseqXP_028189063.10.0zinc finger protein WIP2-like
SwissprotQ9SVY11e-120ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A445I7H80.0A0A445I7H8_GLYSO; Zinc finger protein WIP2
TrEMBLK7M0U90.0K7M0U9_SOYBN; Uncharacterized protein
STRINGGLYMA13G27371.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17034289
Representative plantOGRP4101597
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-121C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]