PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G197300.2.p
Common NameGLYMA_13G197300, LOC100777812
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family SRS
Protein Properties Length: 320aa    MW: 34173.9 Da    PI: 8.0081
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G197300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF702173.21.3e-531222787154
               DUF702   7 sCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrel...kskkqsalsstklss 93 
                           CqdCGn+ak+dC+++RCRtCCk rgfdC+thvkstWvpa+ rr      +        ++++ askr r+l   k+ ++sa+s++++s+
  Glyma.13G197300.2.p 122 VCQDCGNRAKRDCSFRRCRTCCKGRGFDCSTHVKSTWVPASMRRGGGGDSS----GGDGNSDAGASKRLRTLgssKNVAASATSHSSTSN 207
                          7*******************************************9643333....33334445555555555333566788889999999 PP

               DUF702  94 aeskkeletss..........lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                          a+++k+++tss          lP++v+++avfrc rvs++  ge+e+ Y ++v+i+GhvfkG+Lyd+G+++
  Glyma.13G197300.2.p 208 ATPTKSFDTSScqqdagfkqsLPRHVRAPAVFRCHRVSAIGSGEDEIVYMATVHISGHVFKGFLYDHGADA 278
                          999999999999999*****************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
TIGRFAMsTIGR016235.6E-25122164IPR006510Zinc finger, lateral root primordium type 1
PfamPF051424.5E-51122277IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016243.0E-21229275IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MNMLGLRDLV FIAPTPSQLH HHQQHQPISA EHHSNLPLPS QASLSVGLGI FPLLTVPHTN  60
DVQVQVQDCA NNNNNTNTNY WNLKMCGATE VNSTRKGVMN MEDEGSNKQM MESEEGGGEF  120
RVCQDCGNRA KRDCSFRRCR TCCKGRGFDC STHVKSTWVP ASMRRGGGGD SSGGDGNSDA  180
GASKRLRTLG SSKNVAASAT SHSSTSNATP TKSFDTSSCQ QDAGFKQSLP RHVRAPAVFR  240
CHRVSAIGSG EDEIVYMATV HISGHVFKGF LYDHGADARN DVPSVSELQL GNNGSGKNNN  300
RECSSAIGVP TSAYPASVC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.361270.0flower| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G197300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0973460.0BT097346.1 Soybean clone JCVI-FLGm-16G15 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003542825.10.0protein LATERAL ROOT PRIMORDIUM 1
TrEMBLI1M0S80.0I1M0S8_SOYBN; Uncharacterized protein
STRINGGLYMA13G26730.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G12330.24e-48Lateral root primordium (LRP) protein-related