PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G189400.1.p
Common NameGLYMA_13G189400, LOC100814712
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family NF-YC
Protein Properties Length: 288aa    MW: 31679 Da    PI: 5.0633
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G189400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC61.41.8e-196861898
                NF-YC 18 nhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdifdflvdivpr 98
                         ++++P arikki++adedv +i+  +Pvl+ska elf+ +l  r++  + +   +t++   ++ +v++ ++fdfl d+v r
  Glyma.13G189400.1.p  6 DTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNSLHLKHCVQSYNVFDFLRDVVSR 86
                         5789**************************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.103.9E-26372IPR009072Histone-fold
SuperFamilySSF471138.75E-21499IPR009072Histone-fold
PfamPF008082.2E-19871IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MRKKLDTRFP AARIKKIMQA DEDVGKIALA VPVLVSKALE LFLQDLCDRT YEITLQRGAK  60
TMNSLHLKHC VQSYNVFDFL RDVVSRVPDY SHGHGHAEAG PDDRAIAKRR KAVGDDGNDS  120
DEEAKRSKMH ELGHTGSTGR GRGRGRGRGR GRGRPPLNRE IYHQDAESEP CTSVQPSNPQ  180
NTNTSVAMDS GSESKEIPKE QNIAVPVEST DSLRNIDLNA ITNENDDKKA SAAADASVPE  240
PPTESKHEEI PGWSLSDVDK MAIDSLQLAQ LGRPLEEDEE DYDEEEG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1jfi_A4e-23272575Transcription Regulator NC2 alpha chain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1143152RGRGRGRGRG
2143153RGRGRGRGRGR
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G189400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0941550.0BT094155.1 Soybean clone JCVI-FLGm-18C10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001350899.10.0class 2 transcription repressor NC2 alpha 4
TrEMBLI1M0K00.0I1M0K0_SOYBN; Uncharacterized protein
STRINGGLYMA13G25860.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17283491
Representative plantOGRP21791635
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12480.18e-78nuclear factor Y, subunit C11