PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G184500.1.p
Common NameGLYMA_13G184500, LOC100804023
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 509aa    MW: 56331.8 Da    PI: 9.5089
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G184500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.51.5e-08842338
                         SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
      Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                          W+t+E++ll  a+ ++G+++W+ Ia+++  +Rt  
  Glyma.13G184500.1.p  8 TWSTWEELLLGGAISRHGTRDWTVIAAELK-TRTVS 42
                         7****************************9.***76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466895.22E-5845IPR009057Homeodomain-like
PfamPF002491.3E-7844IPR001005SANT/Myb domain
CDDcd001672.33E-5858No hitNo description
Gene3DG3DSA:1.10.10.609.8E-5947IPR009057Homeodomain-like
Gene3DG3DSA:1.20.920.104.8E-14255368IPR001487Bromodomain
SMARTSM002971.6E-13262366IPR001487Bromodomain
CDDcd043692.93E-6266361No hitNo description
SuperFamilySSF473701.19E-15267365IPR001487Bromodomain
PfamPF004397.5E-9272348IPR001487Bromodomain
PROSITE profilePS500149.463285347IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MEEETMVTWS TWEELLLGGA ISRHGTRDWT VIAAELKTRT VSPCIFTPEV CKAKYEELNF  60
QYPGGCTSWF EELKKKRVAE LKRDLKQSEE VIGSLEMKIE TLKAGRDEKR DDCHVDNGSA  120
EPELNVPSHK LDRVNDSPKE MSKDGLSAGS FTHETKTNWT HECQIPATSC EDVATKPEAS  180
GSTEQEKVLN VDKLANIVYQ EHGGCLKKPR GKRKRKDCSR SINEVSVRES DFSADVCKES  240
SLSYCGEIVK SSGVNEENAN LKTAGIKDLM ELLDSFLVVQ GASVFTYKHD NQKQGRYEKL  300
IRQHVDFDTI KSRIHNGTIK SVVELLRDLL LLSNNALVFY SKNTREHKTG LQLRDLVIKT  360
LTEKLESSST SPVGDPSVNV ISTRSSTSYL RDSSARVRSM PSTSPVRDSS VKVRSMRPGN  420
RKIVAKVAGG SSSAERVLVG AKKANKVDTI PAERVSAAVK KANKVDSPPS VESLSFKKAC  480
GGRTRTVGHE SAVKRNATPR NDRKRIAK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G184500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541553.10.0uncharacterized protein LOC100804023
TrEMBLI1M0F70.0I1M0F7_SOYBN; Uncharacterized protein
STRINGGLYMA13G25380.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63041723
Representative plantOGRP829569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42150.13e-29DNA-binding bromodomain-containing protein