PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G180200.1.p
Common NameGLYMA_13G180200, LOC100783723
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HSF
Protein Properties Length: 214aa    MW: 24798.1 Da    PI: 7.8516
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G180200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind105.54.2e-33381342102
                          HHHHHHHHHC.....TGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXX CS
         HSF_DNA-bind   2 Flkklyeile.....deelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksF 86 
                          Fl k+ye+le     +++ ++++sw+++g+ fvv+ + ef++  Lp+yFkh+nf+SF+RQLn+YgFkk+++++         weFkh++F
  Glyma.13G180200.1.p  38 FLLKTYELLEelsenEKDSTKIVSWNAEGTGFVVWSPAEFSELTLPRYFKHNNFSSFIRQLNTYGFKKISSKK---------WEFKHEKF 118
                          9*********8888778999**************************************************998.........******** PP

                          XXXXXXXXXXXXXXXX CS
         HSF_DNA-bind  87 kkgkkellekikrkks 102
                          ++g ++ l +i rkk 
  Glyma.13G180200.1.p 119 QRGCRHILGEITRKKC 134
                          *************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.2E-3430126IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-4134132IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467855.98E-2835132IPR011991Winged helix-turn-helix DNA-binding domain
PfamPF004476.5E-2938132IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434082106IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MADNYNVLEL NIGLGNNNNS KVGGHAGQSP RQRCPAPFLL KTYELLEELS ENEKDSTKIV  60
SWNAEGTGFV VWSPAEFSEL TLPRYFKHNN FSSFIRQLNT YGFKKISSKK WEFKHEKFQR  120
GCRHILGEIT RKKCEPSVFP AYLKSSSEEN NATSSMEENN DHHQLLMEEN KNLKKERLEL  180
QMQIDECKTL EMKLLECLSQ FMDSHQNKVR RLC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1hks_A6e-16341324106HEAT-SHOCK TRANSCRIPTION FACTOR
1hkt_A6e-16341324106HEAT-SHOCK TRANSCRIPTION FACTOR
5d5u_B9e-162413219129Heat shock factor protein 1
5d5v_B9e-162413219129Heat shock factor protein 1
5d5v_D9e-162413219129Heat shock factor protein 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G180200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1454111e-132BT145411.1 Lotus japonicus clone JCVI-FLLj-13E6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028189362.11e-158heat stress transcription factor B-2a-like
TrEMBLA0A445I6D91e-157A0A445I6D9_GLYSO; Heat shock factor protein HSF24
STRINGGLYMA13G24860.11e-158(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF113572839
Representative plantOGRP9617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36990.11e-36heat shock factor 4