PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G175200.1.p
Common NameGLYMA_13G175200, LOC100784945
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family HB-other
Protein Properties Length: 1797aa    MW: 201161 Da    PI: 5.2225
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G175200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox58.61e-1848103257
                          T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
             Homeobox   2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 
                           kR+  t+ qle+Le++++ ++yps+++r eL++klgL++rq ++WF+ rR k+kk
  Glyma.13G175200.1.p  48 PKRQMKTPFQLETLEKAYAVDNYPSETMRVELSEKLGLSDRQLQMWFCHRRLKDKK 103
                          69****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.4E-1827103IPR009057Homeodomain-like
SuperFamilySSF466893.89E-1736103IPR009057Homeodomain-like
PROSITE profilePS5007116.81144104IPR001356Homeobox domain
SMARTSM003891.2E-1846108IPR001356Homeobox domain
PfamPF000462.2E-1648103IPR001356Homeobox domain
CDDcd000869.68E-1549103No hitNo description
SMARTSM005719.4E-20557616IPR018501DDT domain
PROSITE profilePS5082715.679557616IPR018501DDT domain
PfamPF027911.9E-16559613IPR018501DDT domain
PfamPF050661.7E-15739807IPR007759HB1/Asxl, restriction endonuclease HTH domain
PfamPF156125.8E-9945987IPR028942WHIM1 domain
PfamPF156131.5E-1211281200IPR028941WHIM2 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010228Biological Processvegetative to reproductive phase transition of meristem
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1797 aa     Download sequence    Send to blast
MESEACSEGE NNLKRGGTDD DSNENNNNNN NNGSSGKIVN CNEGQSKPKR QMKTPFQLET  60
LEKAYAVDNY PSETMRVELS EKLGLSDRQL QMWFCHRRLK DKKDLPSKKP PRKVLAEPLP  120
DSPRDDPRLG LELANEYGSG SGSGSSPYAR VEPLNVAPLG VPGYYESPQA KLEHRAIACV  180
EAQLGEPLRE NGPILGVEFD PLPPDAFGAP IAVTEQQKLP SFAYDSKIYE RHDARTNKAM  240
ARTFRDNQFL PNKSAIRSDA SGQFSQSHLH DLVEGSVRNP PFAHGNEHLP RIHATKGHSS  300
RVRLLSQQDK QLIPYQSPSR DDDVAPQREM YPNIANVGKN SHFTDHQIVG PENLHALHSG  360
QVLHNNATRI EKKRKSDDAQ DVEAHEMKIR KELEKQDNLR RKSEERTRKE MERQDRERKK  420
EEERLMRERQ REEERARREQ KREIERREKF LLKENLKAEK MRQREELRKE RDAERRKAAL  480
EKATARRMAK ESMELIEDEQ LEMMELAASS KGFSSIVHLD FDTLQHLESF RDSLSVFPPK  540
SVKLRKPFAI KPWINSENNV GNLLMVWRFF INFADVLELW SFTLDEFVQA FHDYDSRLLG  600
EIHVALLKVI IKDIEDVART PSTGLGANQN GAANSGGGHP EIVEGAYAWG FDIRNWHKHL  660
NLLTWPEIFR QLALSAGYGP QLKKRSISWS YANNKDEGRN CEDIISTLRN GSAAENAVAK  720
MHERGLLAPR RSRHRLTPGT VKFAAFHVLS LEGEKGLNVL ELAEKIQKSG LRDLTTSKTP  780
EASISVALTR DAKLFERIAP STYCVREAFR KDPADAESIL SDARKKIQIF EKGFLAGEDT  840
DDIEREESES DEIDEDPEVD DLVNLSSANR TSEQCDDFSS NGKANLGHNV ELQGEFDKDL  900
PCFPESGSKN ADAPIAVTGQ PGAVEDLNVG NLGEDNMEID ESKPGESWVL GLAEGEYSDL  960
SVEERLNALV VLVGVANEGN SIRVVLEDRL EAANALKKQM WAESQVDKVR LKDDTFSKSD  1020
FPSINGNKVE IQYSCPVMEG KQSPLIGINI GNNNNNNNNN VPSPSIAENQ KAVFGAQSQS  1080
IEKHSSAQDL CTGPDNPQTQ SLGQYSKRSR SQWKSYISHM AEEMYVYRSL PLGQDRRRNR  1140
YWQFVASASS NDPGSGRIFV EYLDGYWRLI DTEEAFDALL NSLDSRGIRE SHLRLMLQKV  1200
ESSFKENVRK NTQCSKIGSI GETCVKNEAD ETDSSPDRHT GSDSPSSTLC GLNSDTSETS  1260
SSFKIELGKS ESDKKSALRR YQDFQKWMWK ECYNSSILCA MKYGKKRCKP QVVMCDICLN  1320
PYFFEDSHCS GCHRTFPSNS GFSFSKHAFQ CGDKSSKDIC ILDSLPLRTR LLKAMLAFIE  1380
ASVLPEALKS NWTEDIRRHW SVKLSKSSSI EELLQILTLL ERALKQDFLS STFSTTGEQL  1440
GLNSMSKSAA QTSTDPESVA VLPWVPLTTS AVSLRLLEFD ASIVYVPHEK PEPCEEKEDR  1500
VYIKLPSRYN PSKSSKVAEA ADLDRDEFMK VKSAPVKIVQ SNNKRGRGSR DKGRGKKLSK  1560
TKQNTGRRGA KVAGNAGQRI KKQGVGSQGQ AGGRGRRTVR KRRVGKKAVE DLLMGHRDAS  1620
HSSSIGRESL RSLDDDWDDE KASPMTPIHM GAANSNNSIE EVESDDNVEA MESDDNVQAM  1680
ESDDKVQAME SDDNVQAAES DDNGQAVEYD QGNWEIGFNG APSRWSRDLV GGISDEDEDE  1740
DAEASEDDND NGIGIENNEE VDSEADAMSE EGSDGTANRI VNEESSDSDV SEDSSD*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
196103RRLKDKKD
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G175200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150340.0AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006594306.10.0homeobox-DDT domain protein RLT1 isoform X2
TrEMBLI1M0690.0I1M069_SOYBN; Uncharacterized protein
STRINGGLYMA13G24370.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF25233369
Representative plantOGRP15771634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.10.0homeobox-1