PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G157300.1.p
Common NameGLYMA_13G157300, LOC100803673
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family TALE
Protein Properties Length: 347aa    MW: 39797.3 Da    PI: 5.7559
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G157300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox22.91.4e-072843162254
                          SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
             Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                           +yp++e++++L +++gL+ +q+ +WF N+R +
  Glyma.13G157300.1.p 284 WPYPTEEDKARLVQETGLQLKQINNWFINQRKR 316
                          59*****************************87 PP
2ELK29.22.2e-10237258122
                  ELK   1 ELKhqLlrKYsgyLgsLkqEFs 22 
                          ELKh+L+++Y+++++++++E++
  Glyma.13G157300.1.p 237 ELKHELKQGYKEKIVDIREEIL 258
                          9*******************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012554.5E-1872116IPR005540KNOX1
PfamPF037902.2E-1774115IPR005540KNOX1
SMARTSM012565.3E-26125180IPR005541KNOX2
PfamPF037918.6E-19130179IPR005541KNOX2
SMARTSM011886.1E-4237258IPR005539ELK domain
PROSITE profilePS512139.969237257IPR005539ELK domain
PfamPF037897.7E-7237258IPR005539ELK domain
PROSITE profilePS5007111.612257320IPR001356Homeobox domain
SuperFamilySSF466895.99E-16259324IPR009057Homeodomain-like
SMARTSM003891.1E-10259324IPR001356Homeobox domain
CDDcd000861.90E-10260320No hitNo description
Gene3DG3DSA:1.10.10.609.2E-25264321IPR009057Homeodomain-like
PfamPF059209.0E-18277316IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 347 aa     Download sequence    Send to blast
MAFHDHLQHE IGFQRFTEEQ ELNENRDMQQ RLPPPTWLNN VNVNARQQNF LDSEKSVDRN  60
RSESNCESED LREYKADILG HPLYDQLLSA HVSCLRIATP VDQLPRIDAQ LQQSQRVVEK  120
YSALAHNGVV DEKELDQFMT HYVLLLCAFK EQLQQHVRVH AMEAVMACWD LEQSLQSLTG  180
VSPGEGTGAT MSDDEDDQAE SNANLYEGSL DGGETLGFGP LVPTESERSL MERVRHELKH  240
ELKQGYKEKI VDIREEILRK RRAGKLPGDT TSLLKAWWQS HSKWPYPTEE DKARLVQETG  300
LQLKQINNWF INQRKRNWHT NNPSSSSNSK SKRKSSAGET SNQSFM*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.596330.0leaf| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G157300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006594231.10.0homeobox protein knotted-1-like 4 isoform X1
SwissprotP480001e-164KNAT3_ARATH; Homeobox protein knotted-1-like 3
TrEMBLI1LZN40.0I1LZN4_SOYBN; Uncharacterized protein
STRINGGLYMA13G22530.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101734108
Representative plantOGRP16717148
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25220.11e-159KNOTTED1-like homeobox gene 3
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]