PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G151200.1.p | ||||||||
Common Name | GLYMA_13G151200, LOC100780835 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | HSF | ||||||||
Protein Properties | Length: 455aa MW: 51109.3 Da PI: 4.941 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 110.2 | 1.5e-34 | 23 | 115 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkk 91 Fl+k++++++d++l+ +isw ++g sfvv+d+ efa+ vLp++Fkh+nf+SFvRQLn+YgF+k+++++ weF ++ F++gkk Glyma.13G151200.1.p 23 FLSKTFDLVDDPTLDPIISWGSTGFSFVVWDPLEFARIVLPRHFKHNNFSSFVRQLNTYGFRKIDTDK---------WEFFNEAFQRGKK 103 9****************************************************************999.........************* PP XXXXXXXXXXXX CS HSF_DNA-bind 92 ellekikrkkse 103 +ll++i+r++s+ Glyma.13G151200.1.p 104 HLLKNIQRRRSS 115 *********987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46785 | 1.02E-33 | 19 | 112 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 8.5E-54 | 19 | 112 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.10.10.10 | 2.8E-36 | 20 | 112 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 2.8E-18 | 23 | 46 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.6E-30 | 23 | 112 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.8E-18 | 61 | 73 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 62 | 86 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.8E-18 | 74 | 86 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 455 aa Download sequence Send to blast |
MNPNDANSPK PLEILQMNPV PPFLSKTFDL VDDPTLDPII SWGSTGFSFV VWDPLEFARI 60 VLPRHFKHNN FSSFVRQLNT YGFRKIDTDK WEFFNEAFQR GKKHLLKNIQ RRRSSQSQQV 120 GSYIGIECST EAGRSDVEIE IERLRKERTM LMEEVVDLKQ EQRRMAHRAG EVNQRLQSTE 180 QRQKQMVSFL VKLIQNPAFL ARLRHEEQKE IDSPRVVRKF VKQHQHETGT AETLQEGQIV 240 RYQHDWRNIG MSSETPKLSP VSIEQSPHYL SQGLAGEVSV GAEDLTAQIE NIVSNDLAAV 300 HGITVSQEIM IGEGLSSFGA EDPLFKGKSV MSPILEVPPE YFASFPEGLT KGKDFQDFSA 360 LGTEGMIKLE DIWDSGLNVS GAASGSGNEL WSNHVNYEEF PEFGVTSGMS DSDIWDIGLG 420 SLGIDKWPTD EPSLGETNGQ AGQPKEDRPK NFGP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ldu_A | 1e-24 | 20 | 117 | 17 | 125 | Heat shock factor protein 1 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.29806 | 0.0 | root| seed coat |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G151200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003541445.1 | 0.0 | heat stress transcription factor A-3 | ||||
Refseq | XP_028197984.1 | 0.0 | heat stress transcription factor A-3-like | ||||
TrEMBL | A0A445HGD5 | 0.0 | A0A445HGD5_GLYSO; Heat stress transcription factor A-3 | ||||
TrEMBL | I1LZF5 | 0.0 | I1LZF5_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G21490.1 | 0.0 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8782 | 30 | 38 | Representative plant | OGRP10024 | 9 | 11 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03720.1 | 8e-96 | heat shock transcription factor A3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G151200.1.p |
Entrez Gene | 100780835 |