PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G146400.1.p
Common NameGLYMA_13G146400, LOC100815595
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 289aa    MW: 31826.5 Da    PI: 8.4862
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G146400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2110.0014111133123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+C+ C++ F++   L  H  +H
  Glyma.13G146400.1.p 111 YQCKTCNRYFPSFQALGGHRASH 133
                          9***********99999998887 PP
2zf-C2H213.80.00017191213123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C++Cg  Fs+   L  H+r+H
  Glyma.13G146400.1.p 191 HECSICGAEFSSGQALGGHMRRH 213
                          78********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.06E-9110133No hitNo description
PROSITE profilePS5015710.18111138IPR007087Zinc finger, C2H2
SMARTSM003550.12111133IPR015880Zinc finger, C2H2-like
PfamPF139128.8E-11111135IPR007087Zinc finger, C2H2
PROSITE patternPS000280113133IPR007087Zinc finger, C2H2
SuperFamilySSF576672.06E-9186213No hitNo description
Gene3DG3DSA:3.30.160.606.7E-4187213IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139127.4E-13190214IPR007087Zinc finger, C2H2
SMARTSM003550.01191213IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.743191213IPR007087Zinc finger, C2H2
PROSITE patternPS000280193213IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MQVQEELLVA SKDHTHQMMM IKGKRTKRQR APSPLSLAMP YNNSTSSSTN NSIDSATTSP  60
SPTNTIELRE DEDMANCLIL LAQGRHHVAA PTSYHNNDNN DNHKSTSLYL YQCKTCNRYF  120
PSFQALGGHR ASHKKPKQNG TFSSEAVTTF VEENNDRYDP TTSTTLSLKI PNGVNNNMCS  180
TTTTTTKAKV HECSICGAEF SSGQALGGHM RRHRTLVNAS LATSMSGGNV VGVGGNNEFQ  240
EAKKPLKLDL NLPALPEDDH RESKFSFQQR EKNVIVFSKQ SSLVDCHY*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G146400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541431.10.0zinc finger protein ZAT5
TrEMBLI1LZA70.0I1LZA7_SOYBN; Uncharacterized protein
STRINGGLYMA13G20950.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF58634141
Representative plantOGRP23501035
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28200.12e-52C2H2 family protein