 |
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
Glyma.13G145800.1.p |
Common Name | GLYMA_13G145800, LOC100814530 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
|
Family |
MYB |
Protein Properties |
Length: 230aa MW: 26874.7 Da PI: 5.0741 |
Description |
MYB family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Glyma.13G145800.1.p | genome | JGI | View CDS |
|
Signature Domain? help Back to Top |
 |
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | Myb_DNA-binding | 49.3 | 1.1e-15 | 8 | 55 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
+g W +eEde+l v++lG ++W++ a+ g++R++k+c++rw +yl
Glyma.13G145800.1.p 8 KGTWLQEEDEQLTSFVARLGERRWDSLAKVAGLKRSGKSCRLRWMNYL 55
799*******************************************97 PP
|
2 | Myb_DNA-binding | 54.6 | 2.5e-17 | 62 | 106 | 2 | 48 |
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
g ++ eE++l+v++ ++lG++ W++Iar+++ gRt++++k++w ++l
Glyma.13G145800.1.p 62 GHFSVEEEQLIVQLQQELGNK-WAKIARKLP-GRTDNEIKNYWKTHL 106
6799*****************.*********.************986 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 230 aa
Download sequence Send
to blast |
MQGENLRKGT WLQEEDEQLT SFVARLGERR WDSLAKVAGL KRSGKSCRLR WMNYLRPNLK 60 HGHFSVEEEQ LIVQLQQELG NKWAKIARKL PGRTDNEIKN YWKTHLRKRA QAQQGDFKYK 120 LEIATQEVNQ KSIDMDSKNC KHGNVWCQDS EWETKDSSST DTLSLSDWEL RSSPYETRIL 180 DWIAELQNGY GENELEQDCN STGTCNYYPQ EFDEGCDSWD YSGSLWDMN*
|
3D Structure ? help Back to Top |
 |
PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
1gv2_A | 1e-25 | 6 | 110 | 2 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 4e-25 | 6 | 110 | 56 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 4e-25 | 6 | 110 | 56 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 2e-25 | 6 | 110 | 25 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 1e-25 | 6 | 110 | 2 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 1e-25 | 6 | 110 | 2 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |