PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G144600.4.p
Common NameGLYMA_13G144600, LOC100810255
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 472aa    MW: 53447.1 Da    PI: 7.3574
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G144600.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.5e-07346393448
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                          WT  E ++lv+++ ++G g+W+ I r +      Rt+ +++++w+++l
  Glyma.13G144600.4.p 346 WTLPEVLKLVEGISEYGVGRWTDIKRFLFsssSYRTPIDLRDKWRNLL 393
                          9***************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.177337397IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-11337400IPR009057Homeodomain-like
SMARTSM007172.9E-8342395IPR001005SANT/Myb domain
CDDcd116601.87E-16344394No hitNo description
SuperFamilySSF466891.64E-15345412IPR009057Homeodomain-like
PfamPF139215.2E-5346404No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
MNERGHEMDR EEYLRKCSNM KCQRVQVDES FVPALQDEVM EVEHLLAEPR NVHASLDGSL  60
DSHTTLNDKD DLELEVLDGL LDDVEIDDLE GTGGFAGACE EYFLDFGFAD KFEEVLGSGP  120
FEGSLLQISS SESHSSGLSG SSIVGGVLES TKVPIAKSEC KNDSLDETIT YEAHGAFRNN  180
PSQPSKVNCR YNISLDIQHL QELENNSHLA AGILTCKKGK GPVEKGQPAV LREKRFRKPT  240
QRYIEEFSNS RSKEKAPTAV TKTEHLSDSS CDVLHIRIKA LKKSPSEKSS NENSDVMLPE  300
LQVRKRRLEK EKLEYDKELF PSESEDECST SKRSRRKDRR KHQKMWTLPE VLKLVEGISE  360
YGVGRWTDIK RFLFSSSSYR TPIDLRDKWR NLLRASSAQK TSREAEQNDE LALRPLPFNV  420
VHRVRELAKI HPYPRQRGSK RLRVSQAGSS IIAKDSPPLS LSKRNVRRKF T*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1331339KRSRRKDRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.361440.0cotyledon| seed coat| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G144600.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0982550.0BT098255.1 Soybean clone JCVI-FLGm-16F17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006594159.10.0uncharacterized protein LOC100810255 isoform X3
RefseqXP_006594160.10.0uncharacterized protein LOC100810255 isoform X3
TrEMBLK7LZR60.0K7LZR6_SOYBN; Uncharacterized protein
STRINGGLYMA13G20760.20.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.29e-24TRF-like 6