PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G144600.1.p
Common NameGLYMA_13G144600, LOC100810255
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 478aa    MW: 54191 Da    PI: 7.3826
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G144600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.55.6e-07352399448
                          S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
      Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                          WT  E ++lv+++ ++G g+W+ I r +      Rt+ +++++w+++l
  Glyma.13G144600.1.p 352 WTLPEVLKLVEGISEYGVGRWTDIKRFLFsssSYRTPIDLRDKWRNLL 399
                          9***************************99**99************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.177343403IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.9E-11343406IPR009057Homeodomain-like
SMARTSM007172.9E-8348401IPR001005SANT/Myb domain
CDDcd116601.75E-16350400No hitNo description
SuperFamilySSF466891.64E-15351418IPR009057Homeodomain-like
PfamPF139215.3E-5352410No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    Send to blast
MNEVRVFNFH GHEMDREEYL RKCSNMKCQR VQVDESFVPA LQDEVMEVEH LLAEPRNVHA  60
SLDGSLDSHT TLNDKDDLEL EVLDGLLDDV EIDDLEGTGG FAGACEEYFL DFGFADKFEE  120
VLGSGPFEGS LLQISSSESH SSGLSGSSIV GGVLESTKVP IAKSECKNDS LDETITYEAH  180
GAFRNNPSQP SKVNCRYNIS LDIQHLQELE NNSHLAAGIL TCKKGKGPVE KGQPAVLREK  240
RFRKPTQRYI EEFSNSRSKE KAPTAVTKTE HLSDSSCDVL HIRIKALKKS PSEKSSNENS  300
DVMLPELQVR KRRLEKEKLE YDKELFPSES EDECSTSKRS RRKDRRKHQK MWTLPEVLKL  360
VEGISEYGVG RWTDIKRFLF SSSSYRTPID LRDKWRNLLR ASSAQKTSRE AEQNDELALR  420
PLPFNVVHRV RELAKIHPYP RQRGSKRLRV SQAGSSIIAK DSPPLSLSKR NVRRKFT*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1337345KRSRRKDRR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.361440.0cotyledon| seed coat| somatic embryo
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G144600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0982540.0BT098254.1 Soybean clone JCVI-FLGm-16F17 unknown mRNA.
GenBankBT0982550.0BT098255.1 Soybean clone JCVI-FLGm-16F17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003542553.10.0uncharacterized protein LOC100810255 isoform X2
RefseqXP_025980800.10.0uncharacterized protein LOC100810255 isoform X2
TrEMBLA0A0R0GYD90.0A0A0R0GYD9_SOYBN; Uncharacterized protein
STRINGGLYMA13G20760.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF47162639
Representative plantOGRP16451536
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72650.21e-23TRF-like 6