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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G144100.1.p | ||||||||
Common Name | GLYMA_13G144100, LOC100811316 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | TCP | ||||||||
Protein Properties | Length: 186aa MW: 19615.3 Da PI: 7.5646 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 110.9 | 1.9e-34 | 35 | 108 | 2 | 78 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaess 78 +k+ +++++hTkv+gR+RRvR++ +caar+F+L++eLG+ +d++tieWLl+ a+++i+++tg+++ +a + ss Glyma.13G144100.1.p 35 VAKRPSTKDRHTKVNGRGRRVRMPPLCAARIFQLTRELGHRSDGETIEWLLRHAETSIIAATGSGTVPAAPV---SS 108 5799************************************************************88777333...22 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 1.4E-28 | 40 | 115 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 26.552 | 41 | 95 | IPR017887 | Transcription factor TCP subgroup |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
MTSQVVLHNN FETKPSATVT TIVESPSVAP PSLAVAKRPS TKDRHTKVNG RGRRVRMPPL 60 CAARIFQLTR ELGHRSDGET IEWLLRHAET SIIAATGSGT VPAAPVSSVG PSAPSSEPMV 120 ACPVTAVGAQ GMFAVPPQPS CRLDLSPPPG MEFAVNGYRH MPFTALLLQP ATADENQNDE 180 SLGEQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G144100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003541424.1 | 1e-133 | transcription factor TCP11 | ||||
Refseq | XP_028196567.1 | 1e-133 | transcription factor TCP11-like | ||||
Swissprot | Q9SJK7 | 5e-44 | TCP11_ARATH; Transcription factor TCP11 | ||||
TrEMBL | A0A445HFT4 | 1e-132 | A0A445HFT4_GLYSO; Transcription factor TCP11 | ||||
TrEMBL | K7LZR4 | 1e-132 | K7LZR4_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G20710.2 | 1e-133 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3819 | 33 | 63 |
Representative plant | OGRP922 | 14 | 59 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37000.1 | 3e-46 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G144100.1.p |
Entrez Gene | 100811316 |