PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

MYB

Protein Properties

Length: 306aa MW: 34184.2 Da PI: 6.3604

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.13G141900.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	52.9	8.8e-17	14	62	1	48
TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 +g+W++eEde+l +++++ G+g +W + +++ g++R++k+c++rw++yl Glyma.13G141900.1.p 14 KGPWSPEEDEKLREYIEKNGTGgNWIALPQKAGLKRCGKSCRLRWLNYL 62 79*********************************************97 PP
2	Myb_DNA-binding	37.6	5.3e-12	69	111	2	46
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 g ++++Ed ++ + + G++ W+ Ia+ ++ gRt++++k++w++ Glyma.13G141900.1.p 69 GEFSEDEDRIICTLYASIGSR-WSIIASQLP-GRTDNDIKNYWNT 111 789****************.*****.*********97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	15.406	9	62	IPR017930	Myb domain
SuperFamily	SSF46689	8.41E-28	11	109	IPR009057	Homeodomain-like
SMART	SM00717	1.5E-12	13	64	IPR001005	SANT/Myb domain
Pfam	PF00249	5.5E-16	14	62	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	9.3E-24	15	69	IPR009057	Homeodomain-like
CDD	cd00167	2.82E-9	16	62	No hit	No description
PROSITE profile	PS51294	21.696	63	117	IPR017930	Myb domain
SMART	SM00717	3.3E-12	67	115	IPR001005	SANT/Myb domain
Pfam	PF00249	6.9E-11	69	111	IPR001005	SANT/Myb domain
CDD	cd00167	2.01E-8	70	113	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.1E-23	70	117	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MGRAPCCDKA NVKKGPWSPE EDEKLREYIE KNGTGGNWIA LPQKAGLKRC GKSCRLRWLN 60 YLRPNLKHGE FSEDEDRIIC TLYASIGSRW SIIASQLPGR TDNDIKNYWN TKLKKKMMGM 120 NPSALKKPHQ VNLSPMLQNS TPSSSFKNNH NSYFQPHLPF TGSESISYSS LPSDNYSTFE 180 SLQNYQVSSV FMETSCSSSS DGSCNNNQIN HVKEAELGYV GDGTFGDQII GRLSYLNSGV 240 EDQDTLKLVP SNAGRVSGVT DEETRLWGES PLEYGLEEIK QLISNSSCNN FMLDDSKTGE 300 MVMYY*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	1e-25	14	117	7	108	B-MYB
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.37233	0.0	root

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.13G141900.1.p

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031266	0.0	KT031266.1 Glycine max clone HN_CCL_52 MYB/HD-like transcription factor (Glyma13g20510.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001341850.1	0.0	MYB/HD-like transcription factor
Refseq	XP_028196212.1	0.0	transcription factor RAX2-like
TrEMBL	A0A445HFW4	0.0	A0A445HFW4_GLYSO; Transcription factor MYB36 isoform A
TrEMBL	I1LZ65	0.0	I1LZ65_SOYBN; MYB/HD-like transcription factor
STRING	GLYMA13G20510.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF130	34	340
Representative plant	OGRP5	17	1784

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G57620.1	9e-77	myb domain protein 36

Link Out ? help Back to Top
Phytozome	Glyma.13G141900.1.p
Entrez Gene	100794828

Publications ? help Back to Top
Chai C, et al. Soybean transcription factor ORFeome associated with drought resistance: a valuable resource to accelerate research on abiotic stress resistance. BMC Genomics, 2015. 16: p. 596 [PMID:26268547]