PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G140600.1.p
Common NameGLYMA_13G140600
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family ARF
Protein Properties Length: 515aa    MW: 57052.2 Da    PI: 8.8995
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G140600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.72.2e-23117218199
                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEE CS
                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFk 83 
                          f k+lt+sd+++ g +++p+ +ae++         ++ +   +  +d +g++W++++iyr++++r++lt+GW+ Fv+ ++L +gD++vF 
  Glyma.13G140600.1.p 117 FAKTLTQSDANNGGGFSVPRYCAETIfprldysADPPVQ--NILAKDVHGETWKFRHIYRGTPRRHLLTTGWSTFVNHKKLVAGDSIVFL 204
                          89****************************997656666..69999******************************************** PP

                          E-SSSEE..EEEEE-S CS
                   B3  84 ldgrsefelvvkvfrk 99 
                            + +++ l+v+++r+
  Glyma.13G140600.1.p 205 --RAENGDLCVGIRRA 218
                          ..4488999****997 PP
2Auxin_resp1111.2e-36286369183
           Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrl.sGtvvgvsdldpvrWpnSkWrsLk 83 
                          aa+ a++k++FevvY+Prast+eF+vk++ ve+a+++++  G Rfkmafetedss++++ +Gt+++v+ +dp++WpnS+Wr+L+
  Glyma.13G140600.1.p 286 AANLAANKKPFEVVYYPRASTPEFCVKASLVEAAMQTRWYSGIRFKMAFETEDSSRISWfMGTISSVQVADPLNWPNSPWRLLQ 369
                          7899******************************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.92E-29109218IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.0E-37110220IPR015300DNA-binding pseudobarrel domain
CDDcd100171.54E-21116217No hitNo description
PROSITE profilePS5086313.014117219IPR003340B3 DNA binding domain
PfamPF023621.3E-21117218IPR003340B3 DNA binding domain
SMARTSM010196.0E-21117219IPR003340B3 DNA binding domain
PfamPF065073.5E-32286369IPR010525Auxin response factor
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009734Biological Processauxin-activated signaling pathway
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
MITFMDTKEK LKEVERCLDP QLWHACAGGM VQMPTVNTKV YYFPQGHAEH ACGPVNFKTC  60
PKVPPFVPCR VVAVKYMADP ETDEVYAKLK LVPLNANDVD YDHDVIGAET RDKPASFAKT  120
LTQSDANNGG GFSVPRYCAE TIFPRLDYSA DPPVQNILAK DVHGETWKFR HIYRGTPRRH  180
LLTTGWSTFV NHKKLVAGDS IVFLRAENGD LCVGIRRAKK GIGGGLETSS GWNPAGGNFP  240
MPYSGFSPFL REDDNRILRN GNSNGLNPSV SMMGKGKVRP EAIIEAANLA ANKKPFEVVY  300
YPRASTPEFC VKASLVEAAM QTRWYSGIRF KMAFETEDSS RISWFMGTIS SVQVADPLNW  360
PNSPWRLLQV TWDEPDLLQN VRRVSPWLVE LVSNMPAIHF SPFSPPRKKL RLPQHPDFPL  420
DGQIPLPTLP NNLLGPNNTN QFGCLLESTP AGMQGARHAH YGLSLSDLHL SKLQSGLSSA  480
GFPPLDHAAT PMKVSNNRHC KSLASVRTSL AYYL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A2e-781839051388Auxin response factor 5
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.516690.0flower| hypocotyl
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots, culms, leaves and young panicles. {ECO:0000269|PubMed:17408882}.
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G140600.1.p
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_028198002.10.0auxin response factor 18-like
RefseqXP_028198003.10.0auxin response factor 18-like
SwissprotQ653H70.0ARFR_ORYSJ; Auxin response factor 18
TrEMBLK7LZP00.0K7LZP0_SOYBN; Auxin response factor
STRINGGLYMA13G20382.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF63734138
Representative plantOGRP5261578
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30080.10.0auxin response factor 16
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Huang J,Li Z,Zhao D
    Deregulation of the OsmiR160 Target Gene OsARF18 Causes Growth and Developmental Defects with an Alteration of Auxin Signaling in Rice.
    Sci Rep, 2016. 6: p. 29938
    [PMID:27444058]