PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G136300.5.p
Common NameGLYMA_13G136300, LOC100797466
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB_related
Protein Properties Length: 266aa    MW: 29133.8 Da    PI: 8.4502
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G136300.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.92.7e-143579147
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                         r +WT+eE++++++a +++  + Wk+I   +g  +t  q++s+ qky
  Glyma.13G136300.5.p 35 RESWTEEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 79
                         789*****************77.*********.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.05E-172985IPR009057Homeodomain-like
PROSITE profilePS5129416.2913084IPR017930Myb domain
TIGRFAMsTIGR015577.4E-193382IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.602.3E-73385IPR009057Homeodomain-like
SMARTSM007171.1E-113482IPR001005SANT/Myb domain
PfamPF002495.9E-123579IPR001005SANT/Myb domain
CDDcd001671.61E-93780No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 266 aa     Download sequence    Send to blast
MNSSTNTSNS QSMAAAASDG SGKKVRKPYT ITKSRESWTE EEHDKFLEAL QLFDRDWKKI  60
EDFVGSKTVI QIRSHAQKYF LKVQKNGTVA HVPPPRPKRK AAHPYPQKAS KNVLVPLPAS  120
VGYASSRNTL APGFASWDET SLLMNAGADK PMTCQDELNN VHHGNEADIG SKGITQITNS  180
SLSGVGNSTR TLLTSEIPKQ GKQAPVLHGL PDFAEVYGFI GSVFDPETND HVQKLKEMDP  240
INFETVLLLM RNLTVNLSSP DFEPI*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.129830.0cotyledon| pod
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:21474993, ECO:0000269|PubMed:21483796, ECO:0000269|PubMed:23638299}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G136300.5.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:22902701, ECO:0000269|PubMed:23638299}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541400.10.0protein REVEILLE 8 isoform X2
RefseqXP_006594106.10.0protein REVEILLE 8 isoform X3
SwissprotQ8RWU31e-133RVE8_ARATH; Protein REVEILLE 8
TrEMBLI1LZ000.0I1LZ00_SOYBN; Uncharacterized protein
TrEMBLI1LZ020.0I1LZ02_SOYBN; Uncharacterized protein
STRINGGLYMA13G19910.10.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.11e-118MYB_related family protein
Publications ? help Back to Top
  1. Manfield IW, et al.
    Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis.
    Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9
    [PMID:16845059]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Fogelmark K,Troein C
    Rethinking transcriptional activation in the Arabidopsis circadian clock.
    PLoS Comput. Biol., 2014. 10(7): p. e1003705
    [PMID:25033214]
  4. Xing H, et al.
    LNK1 and LNK2 recruitment to the evening element require morning expressed circadian related MYB-like transcription factors.
    Plant Signal Behav, 2015. 10(3): p. e1010888
    [PMID:25848708]
  5. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]