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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
Glyma.13G136300.2.p |
| Common Name | GLYMA_13G136300, LOC100797466 |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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| Family |
MYB_related |
| Protein Properties |
Length: 296aa MW: 32383.6 Da PI: 8.6405 |
| Description |
MYB_related family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| Glyma.13G136300.2.p | genome | JGI | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Myb_DNA-binding | 44.7 | 3.1e-14 | 35 | 79 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
r +WT+eE++++++a +++ + Wk+I +g +t q++s+ qky
Glyma.13G136300.2.p 35 RESWTEEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 79
789*****************77.*********.*************9 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 296 aa
Download sequence Send
to blast |
MNSSTNTSNS QSMAAAASDG SGKKVRKPYT ITKSRESWTE EEHDKFLEAL QLFDRDWKKI 60
EDFVGSKTVI QIRSHAQKYF LKVQKNGTVA HVPPPRPKRK AAHPYPQKAS KNVLVPLPAS 120
VGYASSRNTL APGFASWDET SLLMNAGADK PMTCQDELNN VHHGNEADIG SKGITQITNS 180
SLSGVGNSTR TLLTSEIPKQ GKQAPVLHGL PDFAEVYGFI GSVFDPETND HVQKLKEMDP 240
INFETVLLLM RNLTVNLSSP DFEPIKKVLS TYDVNPMAVG IDVKKQTNDL SCQTA*
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| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:21474993, ECO:0000269|PubMed:21483796, ECO:0000269|PubMed:23638299}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:22902701, ECO:0000269|PubMed:23638299}. |
| Publications
? help Back to Top |
- Manfield IW, et al.
Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis.
Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9
[PMID:16845059] - Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Fogelmark K,Troein C
Rethinking transcriptional activation in the Arabidopsis circadian clock.
PLoS Comput. Biol., 2014. 10(7): p. e1003705
[PMID:25033214] - Xing H, et al.
LNK1 and LNK2 recruitment to the evening element require morning expressed circadian related MYB-like transcription factors.
Plant Signal Behav, 2015. 10(3): p. e1010888
[PMID:25848708] - Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
Plant Physiol., 2017. 173(4): p. 2308-2322
[PMID:28254761]
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