PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G133000.1.p
Common NameGLYMA_13G133000, LOC100793782
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 177aa    MW: 19755.6 Da    PI: 9.4031
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G133000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.0003394116123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + C++Cg+ Fs    L  H+r+H
  Glyma.13G133000.1.p  94 HNCSICGQGFSLGQALGGHMRRH 116
                          67********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.604.2E-43864IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139124.2E-114065IPR007087Zinc finger, C2H2
SuperFamilySSF576671.15E-740116No hitNo description
PROSITE profilePS501579.394168IPR007087Zinc finger, C2H2
SMARTSM003550.614163IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
PfamPF139127.6E-994118IPR007087Zinc finger, C2H2
SMARTSM003550.2794116IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.95194121IPR007087Zinc finger, C2H2
PROSITE patternPS00028096116IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 177 aa     Download sequence    Send to blast
MKRQRENEVT TLESWDMQIC STSITPDTSV SSSTISPEDV FECKTCNRKF NSFQALGGHR  60
ACHNKRVKME GEEQQLKTRA KYLGLGKHSE PKMHNCSICG QGFSLGQALG GHMRRHRAST  120
NDVFSSINQV VAKVSVLKRS CNDKVFYLDL NLTPLENDLK LLLFGKLSPK VNLSSF*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G133000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541393.11e-130zinc finger protein ZAT11
RefseqXP_028196901.11e-130zinc finger protein ZAT11-like
TrEMBLA0A0B2SWR81e-129A0A0B2SWR8_GLYSO; Zinc finger protein ZAT11
TrEMBLI1LYW11e-129I1LYW1_SOYBN; Uncharacterized protein
STRINGGLYMA13G19560.11e-129(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF31634175
Representative plantOGRP13115149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G53600.17e-39C2H2 family protein