PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G130100.2.p
Common NameGLYMA_13G130100
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 477aa    MW: 52568.7 Da    PI: 6.4695
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G130100.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH50.53.7e-16267313455
                          HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           hn  ErrRRdriN+++  L+el+P +      K +Ka++L +A+eY+ksLq
  Glyma.13G130100.2.p 267 VHNLSERRRRDRINEKMKALQELIPRC-----NKSDKASMLDEAIEYLKSLQ 313
                          6*************************8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088818.146263312IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.15E-21266341IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.97E-17266317No hitNo description
Gene3DG3DSA:4.10.280.104.5E-21267323IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.0E-13267313IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-18269318IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 477 aa     Download sequence    Send to blast
MELLWQNGQV VMQSQNQRPF RKPPQPPEAN GGDGAISARE IRSSEAENYN NSQHLFMQED  60
EMAAWLHYPI HEDPPPFDHH DFGADIFYPP PNATASQNRG SAAVQSSFRT TELWHPAPRP  120
PIPPPRRPEH APSRIHNFAH FTKHGNASSS SKAAAAAQPT VVDSCETPVA TAEHAETGRA  180
RAAAGKTAVS DGGRETATCD VTVTSSPGDS SGSAEPVERE PMADRKRKGR EHEESEFQSE  240
DVDFESPEAK KQVHGSTSTK RSRAAEVHNL SERRRRDRIN EKMKALQELI PRCNKSDKAS  300
MLDEAIEYLK SLQLQVQMMS MGYGMVPMMF PGIQQYMPPM GMGIGMGMGM EMGMGMNRPV  360
MPFTNMLASS TLPAATAAVH LGPRFPMPPF HMPHVAAPDS SRMQGANHPD NNMLNSLGTL  420
DPDQSRIPNF TDPYQQYLGL QQAQLQLMQT MNQQNVSKPS SSRGQENPEK HQSDET*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1271276ERRRRD
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.230090.0cotyledon| hypocotyl| leaf| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G130100.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0311140.0KT031114.1 Glycine max clone HN_CCL_148 bHLH transcription factor (Glyma10g04890.2) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006594070.10.0transcription factor PIF1 isoform X1
RefseqXP_028197344.10.0transcription factor PIF1-like isoform X1
TrEMBLA0A445HF460.0A0A445HF46_GLYSO; Transcription factor PIF1 isoform C
TrEMBLI1LYS90.0I1LYS9_SOYBN; Uncharacterized protein
STRINGGLYMA13G19250.40.0(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20180.31e-47phytochrome interacting factor 3-like 5