PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ERF

Protein Properties

Length: 154aa MW: 17484.3 Da PI: 6.681

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.13G123000.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61.7	1.6e-19	16	67	2	56
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 +y+G+r+++ +g+++AeIrdp+ +r++lg+f+tae+Aa+a++aa+ ++g+ Glyma.13G123000.1.p 16 RYRGIRRRP-WGKFAAEIRDPTRK--GTRIWLGTFDTAEQAARAYDAAAFHFRGH 67 69*****.******8542..4*********************99996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00018	1.52E-21	16	75	No hit	No description
Gene3D	G3DSA:3.30.730.10	1.5E-32	16	76	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	25.501	16	74	IPR001471	AP2/ERF domain
SMART	SM00380	3.8E-36	16	80	IPR001471	AP2/ERF domain
Pfam	PF00847	1.1E-13	16	67	IPR001471	AP2/ERF domain
SuperFamily	SSF54171	1.24E-23	16	75	IPR016177	DNA-binding domain
PRINTS	PR00367	8.9E-12	17	28	IPR001471	AP2/ERF domain
PRINTS	PR00367	8.9E-12	40	56	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 154 aa Download sequence Send to blast
MEGGRSSASN GNCEVRYRGI RRRPWGKFAA EIRDPTRKGT RIWLGTFDTA EQAARAYDAA 60 AFHFRGHRAI LNFPNEYQSH NPNSSLPMPL IVPPPSYSSS FTSNYSGDDN NHLVRPGEIM 120 QGGDLDDTFE LEYLDNKLLE ELLQMQDNRH FYK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	4e-28	2	77	3	75	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.13G123000.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT091395	0.0	BT091395.1 Soybean clone JCVI-FLGm-7J20 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_001238476.1	1e-113	uncharacterized protein LOC100500462
Refseq	XP_006593380.1	1e-113	uncharacterized protein LOC100500462 isoform X1
Swissprot	Q9LTC5	2e-37	ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBL	C6T1T9	1e-111	C6T1T9_SOYBN; Uncharacterized protein
STRING	GLYMA13G18400.1	1e-112	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF270	33	215
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G23230.1	8e-31	ERF family protein

Link Out ? help Back to Top
Phytozome	Glyma.13G123000.1.p
Entrez Gene	100500462

Publications ? help Back to Top
Van den Broeck L, et al. From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress. Mol. Syst. Biol., 2017. 13(12): p. 961 [PMID:29269383]