PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja

Family

ERF

Protein Properties

Length: 200aa MW: 21987.4 Da PI: 4.893

Description

ERF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Glyma.13G112400.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	61	2.8e-19	19	67	3	55
AP2 3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 ykGVr +k +g+Wv+eIr p++ r+r++lg+f+t+e+Aa+a +aa+ +l+g Glyma.13G112400.1.p 19 YKGVRKRK-WGKWVSEIRLPNS---RQRIWLGSFDTPEKAARAFDAAMFCLRG 67 9**999.******933...5***********************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF54171	2.35E-21	18	77	IPR016177	DNA-binding domain
SMART	SM00380	4.9E-33	18	81	IPR001471	AP2/ERF domain
Gene3D	G3DSA:3.30.730.10	1.6E-30	18	76	IPR001471	AP2/ERF domain
PROSITE profile	PS51032	22.392	18	75	IPR001471	AP2/ERF domain
Pfam	PF00847	9.3E-12	19	67	IPR001471	AP2/ERF domain
PRINTS	PR00367	5.7E-10	19	30	IPR001471	AP2/ERF domain
CDD	cd00018	1.13E-31	19	77	No hit	No description
PRINTS	PR00367	5.7E-10	41	57	IPR001471	AP2/ERF domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MMVKPSSEKP EEHRDSKYYK GVRKRKWGKW VSEIRLPNSR QRIWLGSFDT PEKAARAFDA 60 AMFCLRGRNA KFNFPDNPPD IAGGESMTPS QIQVAAAQFA NAGPHEGHSG RPEHSPMQSL 120 SPSVSEGTVL TDSDVTTLNG SLTDLFTPVG SSGYASDYGI FPGVDDFSGG FYVPEMLNFN 180 YGEENGEGFI VDESFLWNF*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5wx9_A	8e-15	19	75	15	72	Ethylene-responsive transcription factor ERF096
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	19	25	KGVRKRK

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Gma.41628	0.0	flower\| leaf\| meristem\| root

Functional Description ? help Back to Top
Source	Description
UniProt	Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Glyma.13G112400.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	DQ208969	0.0	DQ208969.1 Glycine max dehydration-responsive element binding protein 3 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003542371.3	1e-147	ethylene-responsive transcription factor ERF017
Swissprot	Q84QC2	5e-55	ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBL	I1LY83	1e-146	I1LY83_SOYBN; Uncharacterized protein
STRING	GLYMA13G17250.1	1e-147	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1479	33	99
Representative plant	OGRP6	16	1718

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G19210.1	2e-57	ERF family protein

Link Out ? help Back to Top
Phytozome	Glyma.13G112400.1.p
Entrez Gene	100804384

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Li SJ, et al. The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4. Sci Rep, 2016. 6: p. 20151 [PMID:26837571] Yin XR, et al. Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening. Plant J., 2016. 86(5): p. 403-12 [PMID:27037684]