PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G109100.1.p
Common NameGLYMA_13G109100, LOC100781908
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family MYB
Protein Properties Length: 305aa    MW: 34463.6 Da    PI: 7.1184
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G109100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding50.93.6e-161461148
                         TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
      Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                         rg+WT+ Ed++l ++++ +G g+W+  +++ g++R++k+c++rw++yl
  Glyma.13G109100.1.p 14 RGAWTAHEDKILREYIRVHGEGRWRNLPKRAGLKRCGKSCRLRWLNYL 61
                         89********************************************97 PP
2Myb_DNA-binding53.26.6e-1767111147
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
      Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                          rg+ +++E+el+++++k+lG++ W++Ia +++ gRt++++k++w++ 
  Glyma.13G109100.1.p  67 RGNISPDEEELIIRLHKLLGNR-WSLIAGRLP-GRTDNEIKNYWNTN 111
                          7899******************.*********.***********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-23564IPR009057Homeodomain-like
PROSITE profilePS5129417.246961IPR017930Myb domain
SuperFamilySSF466893.02E-2812108IPR009057Homeodomain-like
SMARTSM007171.2E-131363IPR001005SANT/Myb domain
PfamPF002492.1E-141461IPR001005SANT/Myb domain
CDDcd001677.39E-111661No hitNo description
PROSITE profilePS5129425.4262116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-2465116IPR009057Homeodomain-like
SMARTSM007175.3E-1666114IPR001005SANT/Myb domain
PfamPF002494.0E-1567112IPR001005SANT/Myb domain
CDDcd001672.47E-1271112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006633Biological Processfatty acid biosynthetic process
GO:0006970Biological Processresponse to osmotic stress
GO:0010023Biological Processproanthocyanidin biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 305 aa     Download sequence    Send to blast
MGRSPCCSKE GLNRGAWTAH EDKILREYIR VHGEGRWRNL PKRAGLKRCG KSCRLRWLNY  60
LRPDIKRGNI SPDEEELIIR LHKLLGNRWS LIAGRLPGRT DNEIKNYWNT NLGKKVKDGH  120
QTTANNTQNP MPHLAPIHMA TSSISLSPPK LDSRVVRTKA TKCSKVLFLN PPPHPSMPNK  180
SKTEAEAEAR LVDGVISNQM EHTTYDNGFL SFPDEEKELS TDFLIDFNVG DVCLSDLLNS  240
DFSNTYNFSC TNVNHHEQLS PCSDQPDAMF SDEVLKDWTH SNFADEANAS NNLHSFISFE  300
STEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C3e-251211625128MYB TRANSFORMING PROTEIN
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G109100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150342e-59AP015034.1 Vigna angularis var. angularis DNA, chromosome 1, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541301.10.0transcription factor MYB23
RefseqXP_028197056.10.0transcription factor MYB23-like
TrEMBLA0A0B2PK120.0A0A0B2PK12_GLYSO; Anthocyanin regulatory C1 protein
TrEMBLI1LY440.0I1LY44_SOYBN; Uncharacterized protein
STRINGGLYMA13G16890.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3134817
Representative plantOGRP5171784
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G35550.15e-63MYB family protein