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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Glyma.13G107900.1.p | ||||||||
Common Name | GLYMA_13G107900, LOC100792905 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
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Family | NF-YA | ||||||||
Protein Properties | Length: 234aa MW: 25323.7 Da PI: 10.4502 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 102.8 | 3.3e-32 | 73 | 129 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 d p+YVNaKQy++Il+RRq+Rakl++++kl +ksrkpylheSRh+hAl+R Rg+gGrF Glyma.13G107900.1.p 73 DGPIYVNAKQYHGILRRRQSRAKLKAQNKL-IKSRKPYLHESRHRHALKRVRGTGGRF 129 57****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 1.1E-35 | 71 | 132 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.102 | 72 | 132 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 3.2E-27 | 75 | 129 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.8E-24 | 75 | 97 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 2.8E-24 | 106 | 129 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MKPFLLSHPD TMYNCSQVYC SHSLAHTSYP CGDPYFGSSI VAYGTQAITQ QMVPQMLGLA 60 STRIALPVEL AEDGPIYVNA KQYHGILRRR QSRAKLKAQN KLIKSRKPYL HESRHRHALK 120 RVRGTGGRFL SAKQLQQFNA ELVTDAHSGP GPVNVYQKKD ASEAESHPSR TGKNASITFT 180 AISGLTSMSG NSVSFRRPEH NFLGNSPNIG GSSQCSGGLT FGGGARQCTS VGR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 2e-22 | 73 | 134 | 2 | 63 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 113 | 122 | RHRHALKRVR |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Gma.51871 | 0.0 | leaf| somatic embryo |
Function -- GeneRIF ? help Back to Top | ||||||
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Glyma.13G107900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT096576 | 0.0 | BT096576.1 Soybean clone JCVI-FLGm-15L7 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_001349755.1 | 1e-174 | nuclear transcription factor Y subunit A-12 isoform 1 | ||||
Refseq | XP_003542352.1 | 1e-174 | nuclear transcription factor Y subunit A-12 isoform X1 | ||||
Refseq | XP_014620912.1 | 1e-174 | nuclear transcription factor Y subunit A-12 isoform X1 | ||||
Refseq | XP_014620913.1 | 1e-174 | nuclear transcription factor Y subunit A-12 isoform X1 | ||||
Refseq | XP_028198257.1 | 1e-174 | nuclear transcription factor Y subunit A-3-like isoform X1 | ||||
Refseq | XP_028198258.1 | 1e-174 | nuclear transcription factor Y subunit A-3-like isoform X1 | ||||
Refseq | XP_028198259.1 | 1e-174 | nuclear transcription factor Y subunit A-3-like isoform X1 | ||||
TrEMBL | A0A0B2PK06 | 1e-173 | A0A0B2PK06_GLYSO; Nuclear transcription factor Y subunit A-3 | ||||
TrEMBL | I1LY31 | 1e-173 | I1LY31_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA13G16770.1 | 1e-173 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6949 | 31 | 49 |
Representative plant | OGRP680 | 16 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G72830.1 | 3e-41 | nuclear factor Y, subunit A3 |
Link Out ? help Back to Top | |
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Phytozome | Glyma.13G107900.1.p |
Entrez Gene | 100792905 |