PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G101100.1.p
Common NameGLYMA_13G101100, LOC100803326
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family bHLH
Protein Properties Length: 232aa    MW: 26386.3 Da    PI: 6.7985
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G101100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.46.2e-1459102755
                          HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                  HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            Er+RR+++N+++  Lr ++P+      +K++Ka+i + A+eYI++L+
  Glyma.13G101100.1.p  59 VSERNRRKKLNDRLLALRAVVPNI-----TKMDKASIIKDAIEYIQHLH 102
                          57*********************7.....7*****************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474596.8E-1851118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.15852101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.65E-1455106No hitNo description
Gene3DG3DSA:4.10.280.106.0E-1758119IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-1558107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.2E-1159101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 232 aa     Download sequence    Send to blast
MENIGEDQYG YLPETDLFFP NEDLGSWAIM DGEAVSWYYD SSSPDGTGAS SSVASKNIVS  60
ERNRRKKLND RLLALRAVVP NITKMDKASI IKDAIEYIQH LHEQEKRIQA EILDLESRNK  120
FKNPTYEFDQ DLPILLRSKK KKTEHLFDSL SSRNSPSIEI IELRVTYMRE KTFVVNLTCS  180
KRTDTMVKLC EVFESLKLKV IAANITSFSG TLLKKTAFIE VSLPPILPFL N*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.255380.0hypocotyl| leaf| root
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G101100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0932130.0BT093213.1 Soybean clone JCVI-FLGm-17A23 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006593510.11e-171transcription factor bHLH35
SwissprotQ2HIV92e-68BH035_ARATH; Transcription factor bHLH35
TrEMBLK7LWS61e-169K7LWS6_SOYBN; Uncharacterized protein
STRINGGLYMA13G00480.21e-170(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33893369
Representative plantOGRP27531332
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.21e-50bHLH family protein