PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G096900.1.p
Common NameGLYMA_13G096900, LOC100797828
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family AP2
Protein Properties Length: 529aa    MW: 56967.3 Da    PI: 7.9813
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G096900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP246.11.2e-14146205155
                  AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +++Aa+a++ a++k++g
  Glyma.13G096900.1.p 146 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEDKAARAYDLAALKYWG 205
                          57*******************666664477446**********99*************98 PP
2AP247.25.6e-15248299155
                  AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Glyma.13G096900.1.p 248 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 299
                          57****************988532...5************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541715.23E-17146215IPR016177DNA-binding domain
CDDcd000187.37E-22146215No hitNo description
PfamPF008479.3E-12146205IPR001471AP2/ERF domain
PROSITE profilePS5103218.927147213IPR001471AP2/ERF domain
SMARTSM003806.1E-29147219IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.7E-15147214IPR001471AP2/ERF domain
PRINTSPR003672.2E-6148159IPR001471AP2/ERF domain
CDDcd000185.80E-25248309No hitNo description
SuperFamilySSF541717.19E-18248309IPR016177DNA-binding domain
PfamPF008476.9E-10248299IPR001471AP2/ERF domain
SMARTSM003801.5E-33249313IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.5E-18249308IPR001471AP2/ERF domain
PROSITE profilePS5103219.045249307IPR001471AP2/ERF domain
PRINTSPR003672.2E-6289309IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009845Biological Processseed germination
GO:0040019Biological Processpositive regulation of embryonic development
GO:0048364Biological Processroot development
GO:0060772Biological Processleaf phyllotactic patterning
GO:0060774Biological Processauxin mediated signaling pathway involved in phyllotactic patterning
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 529 aa     Download sequence    Send to blast
MDSCSSPPNN NSLAFSLSNH FPNPSSSPLS LFHSFTYPSL SLTGSHTADA PPEPIAGGGA  60
TNLSIFTGAP KFEDFLGGSS ATATATTCAP PQLPQFSTDN NNHLYDSELK TTIAACFPRA  120
FAAEPTTEPQ KPSPKKTVDT FGQRTSIYRG VTRHRWTGRY EAHLWDNSCR REGQSRKGRQ  180
VYLGGYDKED KAARAYDLAA LKYWGPTTTT NFPISNYEKE LEEMKNMTRQ EFVASLRRKS  240
SGFSRGASIY RGVTRHHQHG RWQARIGRVA GNKDLYLGTF STQEEAAEAY DIAAIKFRGL  300
NAVTNFDMSR YDVKSIANST LPIGGLSGKN KNSTDSASES KSHEASRSDE RDPSAASSVT  360
FASQQQPSSS TLSFAIPIKQ DPSDYWSILG YHNSPLDNTG IRNTTSVTAT SFPSSNNGTT  420
SSLTPFHMEF SNAPTSTGSD NDAAFFSGGG IFVQQQSGHG NGHGSGSSGS SSSSLSCSIP  480
FATPIFSLNS NTSYENSAGY GNWIGPTLHT FQSHAKPSLF QTPIFGME*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Gma.531110.0cotyledon| somatic embryo| stem
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Present in inflorescence meristem and later in young floral mersitems. Expressed in sepal, petal, stamen and carpel primordia. In petal, progressively confined to petal margin and epidermal cells. Restricted to sporogenous tissue in the stamen and to the medial ridge of the carpel. Present in tissues that develop from this ridge, such as placenta and ovule primordia. In ovules, first expressed in distal part of the funiculus and the outer integument, before being confined to the funiculus. {ECO:0000269|PubMed:15988559}.
UniprotTISSUE SPECIFICITY: Expressed in roots, seedlings, inflorescence, and siliques. Also detected at low levels in leaves. {ECO:0000269|PubMed:15988559}.
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Involved in the regulation of floral organs size. {ECO:0000250, ECO:0000269|PubMed:15988559}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G096900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT0310930.0KT031093.1 Glycine max clone HN_CCL_134 AP2-EREBP transcription factor (Glyma17g07010.1) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003541472.10.0AP2-like ethylene-responsive transcription factor AIL5
SwissprotQ6PQQ31e-147AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLI1LVQ80.0I1LVQ8_SOYBN; Uncharacterized protein
STRINGGLYMA13G00950.10.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF125622735
Representative plantOGRP11217209
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-141AINTEGUMENTA-like 5
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Molitor AM,Bu Z,Yu Y,Shen WH
    Arabidopsis AL PHD-PRC1 complexes promote seed germination through H3K4me3-to-H3K27me3 chromatin state switch in repression of seed developmental genes.
    PLoS Genet., 2014. 10(1): p. e1004091
    [PMID:24465219]
  3. Feng J,Chen D,Berr A,Shen WH
    ZRF1 Chromatin Regulators Have Polycomb Silencing and Independent Roles in Development.
    Plant Physiol., 2016. 172(3): p. 1746-1759
    [PMID:27630184]
  4. Santuari L, et al.
    The PLETHORA Gene Regulatory Network Guides Growth and Cell Differentiation in Arabidopsis Roots.
    Plant Cell, 2016. 28(12): p. 2937-2951
    [PMID:27920338]
  5. Du Y,Scheres B
    PLETHORA transcription factors orchestrate de novo organ patterning during Arabidopsis lateral root outgrowth.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(44): p. 11709-11714
    [PMID:29078398]