PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Glyma.13G095500.1.p
Common NameGLYMA_13G095500, LOC100778014
Organism
Glycine max
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Glycine; Soja
Family C2H2
Protein Properties Length: 165aa    MW: 18242.1 Da    PI: 8.2486
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Glyma.13G095500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.000114870123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         ++C++C + F ++  L  H++ H
  Glyma.13G095500.1.p 48 FSCNYCQRKFYSSQALGGHQNAH 70
                         89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.84E-64575No hitNo description
Gene3DG3DSA:3.30.160.608.8E-44889IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.0944875IPR007087Zinc finger, C2H2
PROSITE patternPS0002805070IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 165 aa     Download sequence    Send to blast
MNFHNPNYSL HLRQPDDENH LNLDLLLEPS SSSSSSPSPI SPVEPRIFSC NYCQRKFYSS  60
QALGGHQNAH KLERTLAKKS RELSSNMQSY GSPEQRSNFG ASHHLGRALG VVDNQGQSYA  120
RLGGRKEFSY GSKEGVGVAS SWSRGYTSEH VQEDMGQLDL SLRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapGlyma.13G095500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003543747.11e-118zinc finger protein 2
RefseqXP_028196545.11e-118zinc finger protein 2-like
TrEMBLA0A0B2QRF81e-116A0A0B2QRF8_GLYSO; Zinc finger protein 2
TrEMBLK7LWV81e-116K7LWV8_SOYBN; Uncharacterized protein
STRINGGLYMA13G01090.21e-117(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96192334
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.11e-23zinc finger protein 2